Resource
| Id | Histone_ChIP-seq/ENCSR253JFN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR253JFN [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN509KBQ|/analyses/ENCAN509KBQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF989GXK|/files/ENCFF989GXK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 31915199 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR253JFN | float |
Histone_ChIP-seq_ENCSR253JFN |
Histone_ChIP-seq ENCSR253JFN [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.78, 22.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45368848 | 1.41% | 95383 |
| chr1 | 4942637 | 1.99% | 10022 |
| chr2 | 3284736 | 1.36% | 7168 |
| chr3 | 2678230 | 1.35% | 5839 |
| chr4 | 1358084 | 0.71% | 3194 |
| chr5 | 2186037 | 1.20% | 4944 |
| chr6 | 2048261 | 1.20% | 4849 |
| chr7 | 1901367 | 1.19% | 4270 |
| chr8 | 1667292 | 1.15% | 3673 |
| chr9 | 2315495 | 1.67% | 4680 |
| chr10 | 2531368 | 1.89% | 5173 |
| chr11 | 3111615 | 2.30% | 6289 |
| chr12 | 2060432 | 1.55% | 4337 |
| chr13 | 819923 | 0.72% | 1941 |
| chr14 | 1561572 | 1.46% | 3294 |
| chr15 | 1629635 | 1.60% | 3490 |
| chr16 | 1813724 | 2.01% | 3649 |
| chr17 | 2924872 | 3.51% | 5552 |
| chr18 | 804815 | 1.00% | 1869 |
| chr19 | 1973887 | 3.37% | 3587 |
| chr20 | 1540018 | 2.39% | 3112 |
| chr21 | 430386 | 0.92% | 966 |
| chr22 | 1574562 | 3.10% | 2913 |
| chrX | 209900 | 0.13% | 572 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95383 | 155 | 11657 | 475.65 | 374 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF324PYT.bed.gz | 1.76 MB | 36124e324cd69484f89f8d679d4776ae |
| ENCFF324PYT.tabix.bed.gz | 913.77 KB | 4dbcf910b94d7ca9894467246d6e5c32 |
| ENCFF324PYT.tabix.bed.gz.tbi | 271.25 KB | 9f49e282156373ace7635221f7c5f9ca |
| genomic_resource.yaml | 2.06 KB | 78bb4ec4c1b2277ec98023e1ce6260f8 |
| statistics/ |