Resource

Id Histone_ChIP-seq/ENCSR252TQCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR252TQC [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR252TQC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2022-05-11T01:55:10.361641+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR252TQC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR252TQC float

Histone_ChIP-seq_ENCSR252TQC
Histone_ChIP-seq ENCSR252TQC [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR252TQC [2.05, 81.7]
n
59,088,512
mean
31.3
sd
18.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 590885121.84% 35615
chr1 5703724 2.29% 3408
chr2 4151408 1.71% 2547
chr3 3486530 1.76% 2049
chr4 2435568 1.28% 1431
chr5 2996446 1.65% 1746
chr6 3444970 2.02% 2088
chr7 2865960 1.80% 1836
chr8 2354666 1.62% 1435
chr9 2441458 1.76% 1504
chr10 2585702 1.93% 1604
chr11 3195395 2.37% 1868
chr12 3123368 2.34% 1788
chr13 1375006 1.20% 891
chr14 1881900 1.76% 1107
chr15 1833836 1.80% 1115
chr16 2277020 2.52% 1446
chr17 3225131 3.87% 1872
chr18 1124993 1.40% 705
chr19 3533233 6.03% 2124
chr20 1501881 2.33% 909
chr21 584093 1.25% 378
chr22 1295277 2.55% 778
chrX 1670608 1.07% 985
chrY 339 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35615 205 32719 1659.09 1187
global segment-length histogram

Files

Filename Size md5
ENCFF228SWU.bed.gz 870.26 KB 8148306245051bed320afd6ab6a11bbf
ENCFF228SWU.tabix.bed.gz 394.28 KB 6c33da8552f1d79fc38a7da13c25add3
ENCFF228SWU.tabix.bed.gz.tbi 202.72 KB 6834bdcb229c6ce73b02ba2b53cab843
genomic_resource.yaml 1.7 KB b5bc89200592a002967f08149e90bff0
statistics/