Resource

Id Histone_ChIP-seq/ENCSR249XEBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR249XEB [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR249XEB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male child (3 years)
  • date_created: 2015-10-01T07:17:31.423989+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR249XEB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment: An error has been identified on one more protocol documents in this experiment regarding the antibody specifications. Please refer to the external references for the correct information.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR249XEB float

Histone_ChIP-seq_ENCSR249XEB
Histone_ChIP-seq ENCSR249XEB [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR249XEB [1.76, 8.23]
n
514,390
mean
4.07
sd
0.857

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 5143900.02% 1275
chr1 24439 0.01% 66
chr2 23152 0.01% 70
chr3 19515 0.01% 40
chr4 21352 0.01% 58
chr5 30083 0.02% 79
chr6 10782 0.01% 30
chr7 20418 0.01% 59
chr8 17289 0.01% 48
chr9 16144 0.01% 46
chr10 19460 0.01% 45
chr11 9104 0.01% 27
chr12 27718 0.02% 69
chr13 6862 0.01% 17
chr14 6779 0.01% 20
chr15 22659 0.02% 52
chr16 23260 0.03% 56
chr17 7141 0.01% 15
chr18 4580 0.01% 13
chr19 174236 0.30% 388
chr20 6874 0.01% 20
chr21 14686 0.03% 35
chr22 5061 0.01% 14
chrX 1154 <0.01% 3
chrY 1642 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 1275 220 2239 403.44 337
global segment-length histogram

Files

Filename Size md5
ENCFF624BXQ.bed.gz 23.36 KB 62eb376536c4e89088c09394083aedf5
ENCFF624BXQ.tabix.bed.gz 13.03 KB 8fc316b637d374b5270de6c1f7047a13
ENCFF624BXQ.tabix.bed.gz.tbi 13.87 KB 008b81f64e092796385e0d7dbee192d8
genomic_resource.yaml 2.16 KB 8777383ae73b29597b5e8300ef1d255d
statistics/