Resource

Id Histone_ChIP-seq/ENCSR249LNWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR249LNW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR249LNW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (65 years)
  • date_created: 2017-09-13T18:33:22.053405+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR249LNW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (65 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR249LNW float

Histone_ChIP-seq_ENCSR249LNW
Histone_ChIP-seq ENCSR249LNW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR249LNW [1.71, 26]
n
55,261,428
mean
7.38
sd
3.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 552614281.72% 71097
chr1 3931609 1.58% 5217
chr2 4846659 2.00% 6414
chr3 4130598 2.08% 5253
chr4 1626487 0.86% 2188
chr5 3657365 2.01% 4750
chr6 4053110 2.37% 5144
chr7 2805627 1.76% 3569
chr8 2954398 2.04% 3905
chr9 1516197 1.10% 2090
chr10 2891261 2.16% 3732
chr11 2026504 1.50% 2731
chr12 3432366 2.58% 4297
chr13 916129 0.80% 1263
chr14 2205012 2.06% 2681
chr15 1260996 1.24% 1629
chr16 1923290 2.13% 2415
chr17 2980440 3.58% 3583
chr18 1312119 1.63% 1768
chr19 2599857 4.44% 3034
chr20 1849265 2.87% 2407
chr21 303368 0.65% 415
chr22 728984 1.43% 967
chrX 1309422 0.84% 1643
chrY 365 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71097 175 6483 777.27 592
global segment-length histogram

Files

Filename Size md5
ENCFF755WYW.bed.gz 1.58 MB 428998b783b9f7627ba54fe8c39b9f6e
ENCFF755WYW.tabix.bed.gz 748.28 KB 2829457cdaf82ce9badb839ef23159a6
ENCFF755WYW.tabix.bed.gz.tbi 273.55 KB 5a20897016efa59357b4435f24ed0526
genomic_resource.yaml 3.32 KB 48cca63ec076e995e0da4f1f552924f1
statistics/