Histone_ChIP-seq_ENCSR249LNW
Histone_ChIP-seq ENCSR249LNW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR249LNW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR249LNW [biosamplesummary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (65 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN719JZK|/analyses/ENCAN719JZK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF559MLV|/files/ENCFF559MLV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF559MLV|/files/ENCFF559MLV/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR249LNW | float |
Histone_ChIP-seq_ENCSR249LNW |
Histone_ChIP-seq ENCSR249LNW [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H2AFZ"]
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[1.71, 26] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF755WYW.bed.gz | 1.58 MB | 428998b783b9f7627ba54fe8c39b9f6e |
| ENCFF755WYW.bed.gz.dvc | 101.0 B | f243b90ce23ee3a392cdc7d0db74c7bc |
| ENCFF755WYW.tabix.bed.gz | 748.28 KB | 2829457cdaf82ce9badb839ef23159a6 |
| ENCFF755WYW.tabix.bed.gz.dvc | 106.0 B | 87d7af6212b70dce8a633030906a2141 |
| ENCFF755WYW.tabix.bed.gz.tbi | 273.55 KB | 5a20897016efa59357b4435f24ed0526 |
| ENCFF755WYW.tabix.bed.gz.tbi.dvc | 110.0 B | d02cab3b4c898a4444459ec4067a68bb |
| genomic_resource.yaml | 3.32 KB | 48cca63ec076e995e0da4f1f552924f1 |
| genomic_resource_original.yaml | 3.17 KB | 6b99e54bd9d6551875c6137a683c3e16 |
| statistics/ |