Resource

Id Histone_ChIP-seq/ENCSR249KTUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR249KTU [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR249KTU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (47 years)
  • date_created: 2022-05-11T01:54:45.604524+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR249KTU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR249KTU float

Histone_ChIP-seq_ENCSR249KTU
Histone_ChIP-seq ENCSR249KTU [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR249KTU [1.92, 55.2]
n
38,534,744
mean
22
sd
11.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 385347441.20% 26035
chr1 3850990 1.55% 2557
chr2 2710407 1.12% 1806
chr3 2255513 1.14% 1465
chr4 1723502 0.91% 1149
chr5 1823838 1.00% 1203
chr6 2178261 1.28% 1478
chr7 1889541 1.19% 1345
chr8 1390819 0.96% 946
chr9 1664098 1.20% 1146
chr10 1713479 1.28% 1135
chr11 2089627 1.55% 1322
chr12 2008402 1.51% 1312
chr13 785413 0.69% 558
chr14 1288875 1.20% 867
chr15 1195772 1.17% 811
chr16 1567396 1.74% 1073
chr17 2169279 2.61% 1442
chr18 698725 0.87% 498
chr19 2222818 3.79% 1599
chr20 944727 1.47% 658
chr21 394870 0.85% 262
chr22 870028 1.71% 608
chrX 1098364 0.70% 795
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26035 220 12290 1480.11 1219
global segment-length histogram

Files

Filename Size md5
ENCFF504QPL.bed.gz 687.53 KB e3628aa62cc2c769dc6b610190ef45d9
ENCFF504QPL.tabix.bed.gz 299.62 KB a7c135a95fa527dcca0d2d330d647b3a
ENCFF504QPL.tabix.bed.gz.tbi 162.04 KB cef64cc4ebdc84b8f1352b9684d01fcd
genomic_resource.yaml 1.53 KB 0cccfb238c20e39617489e528a579785
statistics/