Resource

Id Histone_ChIP-seq/ENCSR249AWJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR249AWJ [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR249AWJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000305/
  • biosample_summary: Homo sapiens amnion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:30.403758+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR249AWJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR249AWJ float

Histone_ChIP-seq_ENCSR249AWJ
Histone_ChIP-seq ENCSR249AWJ [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR249AWJ [1.88, 13.4]
n
70,899,042
mean
5.36
sd
1.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 708990422.20% 76385
chr1 7631953 3.07% 7832
chr1_KI270713v1_random 770 1.89% 2
chr2 5701221 2.35% 6184
chr3 4208712 2.12% 4652
chr4 2583835 1.36% 3133
chr5 3535570 1.95% 4030
chr6 3774699 2.21% 4385
chr7 3201252 2.01% 3694
chr8 3193856 2.20% 3491
chr9 3614925 2.61% 3764
chr10 3713065 2.78% 3989
chr11 4430043 3.28% 4464
chr12 3225405 2.42% 3546
chr13 1568316 1.37% 1853
chr14 2591925 2.42% 2618
chr15 2542627 2.49% 2651
chr16 2375212 2.63% 2458
chr17 3941683 4.73% 3820
chr17_GL000205v2_random 713 0.38% 1
chr18 1437328 1.79% 1672
chr19 2791180 4.76% 2952
chr20 1924537 2.99% 2027
chr21 843686 1.81% 935
chr22 1718628 3.38% 1695
chrUn_GL000195v1 555 0.30% 1
chrX 340082 0.22% 522
chrY 7264 0.01% 14
3339 contigs with no values (128667853 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76385 225 11883 928.18 756
global segment-length histogram

Files

Filename Size md5
ENCFF060QYJ.bed.gz 1.43 MB 34ad19ed58303da2f6eda78d07617b43
ENCFF060QYJ.tabix.bed.gz 751.78 KB 55e4b1a69ae490cdace1e977f10cf4f3
ENCFF060QYJ.tabix.bed.gz.tbi 262.27 KB 5ceb23874572dfbc39670668839c870f
genomic_resource.yaml 1.98 KB 07894e56203cb2535768fb2d8f3f0009
statistics/