Resource
| Id | Histone_ChIP-seq/ENCSR245YZT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR245YZT [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (76 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (76 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN310VBR|/analyses/ENCAN310VBR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF588KNM|/files/ENCFF588KNM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32392720 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR245YZT | float |
Histone_ChIP-seq_ENCSR245YZT |
Histone_ChIP-seq ENCSR245YZT [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (76 years)" and target="H3K36me3"]
|
 |
[1.73, 29.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 124460038 | 3.87% | 139124 |
| chr1 | 12324426 | 4.95% | 13444 |
| chr2 | 9459157 | 3.91% | 11188 |
| chr3 | 7747891 | 3.91% | 9026 |
| chr4 | 4758100 | 2.50% | 5925 |
| chr5 | 6020742 | 3.32% | 7109 |
| chr6 | 5596418 | 3.28% | 6579 |
| chr7 | 5697213 | 3.58% | 6612 |
| chr8 | 4328385 | 2.98% | 5213 |
| chr9 | 5650894 | 4.08% | 6200 |
| chr10 | 5563541 | 4.16% | 6483 |
| chr11 | 6431945 | 4.76% | 6673 |
| chr12 | 6704396 | 5.03% | 7240 |
| chr13 | 2488588 | 2.18% | 3188 |
| chr14 | 4386989 | 4.10% | 4964 |
| chr15 | 4671692 | 4.58% | 5319 |
| chr16 | 5899528 | 6.53% | 5979 |
| chr17 | 7041094 | 8.46% | 7183 |
| chr18 | 2090910 | 2.60% | 2660 |
| chr19 | 6680962 | 11.40% | 6455 |
| chr20 | 3989188 | 6.19% | 4120 |
| chr21 | 1544019 | 3.31% | 1647 |
| chr22 | 3452216 | 6.79% | 3248 |
| chrX | 1834084 | 1.18% | 2513 |
| chrY | 97660 | 0.17% | 156 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 139124 | 180 | 18703 | 894.6 | 619 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF440QDP.bed.gz | 2.8 MB | cd964548552d489d31be5e01e9531be4 |
| ENCFF440QDP.tabix.bed.gz | 1.34 MB | 5eec0a4a0fe740b63dcf3594a67eb167 |
| ENCFF440QDP.tabix.bed.gz.tbi | 171.97 KB | adf87d96eaa333e623475ea42e4a410a |
| genomic_resource.yaml | 2.01 KB | 125ca7631dc7af8a34e51888b4e18e08 |
| statistics/ |