Resource

Id Histone_ChIP-seq/ENCSR245QRVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR245QRV [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR245QRV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:53:57.649164+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR245QRV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR245QRV float

Histone_ChIP-seq_ENCSR245QRV
Histone_ChIP-seq ENCSR245QRV [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR245QRV [1.87, 66.8]
n
74,661,320
mean
27.4
sd
17.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 746613202.32% 40806
chr1 7236731 2.91% 3883
chr2 5320815 2.20% 2984
chr3 4446365 2.24% 2374
chr4 3121060 1.64% 1724
chr5 3865706 2.13% 2078
chr6 4330810 2.54% 2386
chr7 3635172 2.28% 2116
chr8 3001585 2.07% 1671
chr9 3148830 2.28% 1782
chr10 3302047 2.47% 1882
chr11 4020236 2.98% 2083
chr12 3899354 2.93% 2031
chr13 1786865 1.56% 1056
chr14 2364775 2.21% 1288
chr15 2327782 2.28% 1283
chr16 2828362 3.13% 1552
chr17 4032487 4.84% 2140
chr18 1460783 1.82% 844
chr19 4239335 7.23% 2238
chr20 1926257 2.99% 1066
chr21 730937 1.56% 429
chr22 1640213 3.23% 877
chrX 1994813 1.28% 1039
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40806 243 35451 1829.67 1203
global segment-length histogram

Files

Filename Size md5
ENCFF395YRZ.bed.gz 1005.37 KB cc61ef8b3b7eb816cc06da1af0324e37
ENCFF395YRZ.tabix.bed.gz 451.87 KB 6e5372f1dd635d3df0ff7828c02458b7
ENCFF395YRZ.tabix.bed.gz.tbi 218.48 KB f95c45298ce3cd015937be9a3b0b3738
genomic_resource.yaml 1.75 KB 375823d7ce20a7c65212089fc9154a01
statistics/