Resource
| Id | Histone_ChIP-seq/ENCSR244MNY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR244MNY [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN197PFT|/analyses/ENCAN197PFT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF107JYS|/files/ENCFF107JYS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 42583052 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR244MNY | float |
Histone_ChIP-seq_ENCSR244MNY |
Histone_ChIP-seq ENCSR244MNY [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K4me1"]
|
 |
[1.83, 22.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51485867 | 1.60% | 108591 |
| chr1 | 5701405 | 2.29% | 11694 |
| chr2 | 3959611 | 1.63% | 8503 |
| chr3 | 3220695 | 1.62% | 7106 |
| chr4 | 1783474 | 0.94% | 4265 |
| chr5 | 2451902 | 1.35% | 5426 |
| chr6 | 2555831 | 1.50% | 5855 |
| chr7 | 2377444 | 1.49% | 5262 |
| chr8 | 2196177 | 1.51% | 4628 |
| chr9 | 2546270 | 1.84% | 5170 |
| chr10 | 2488124 | 1.86% | 5260 |
| chr11 | 2927283 | 2.17% | 5879 |
| chr12 | 2288663 | 1.72% | 5024 |
| chr13 | 1103142 | 0.96% | 2605 |
| chr14 | 1764698 | 1.65% | 3629 |
| chr15 | 1636732 | 1.60% | 3472 |
| chr16 | 2031896 | 2.25% | 3793 |
| chr17 | 2945594 | 3.54% | 5639 |
| chr18 | 850546 | 1.06% | 1990 |
| chr19 | 2699380 | 4.61% | 5140 |
| chr20 | 1458289 | 2.26% | 2976 |
| chr21 | 659776 | 1.41% | 1493 |
| chr22 | 1533591 | 3.02% | 2847 |
| chrX | 305344 | 0.20% | 935 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108591 | 150 | 7006 | 474.13 | 367 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF536GRY.bed.gz | 2.0 MB | 37208d2e81c1f72443e2cfd6f02cfb6b |
| ENCFF536GRY.tabix.bed.gz | 1.03 MB | a8c5f0a9eb3bca12a22a0b45ffe1a687 |
| ENCFF536GRY.tabix.bed.gz.tbi | 281.8 KB | d53f23e71f57d667f9f6016425e00ceb |
| genomic_resource.yaml | 1.99 KB | f79102a77d2c89fd3b06508e09140cff |
| statistics/ |