Resource
| Id | Histone_ChIP-seq/ENCSR239WVI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR239WVI [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 36 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR239WVI | float |
Histone_ChIP-seq_ENCSR239WVI |
Histone_ChIP-seq ENCSR239WVI [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K36me3"]
|
 |
[1.52, 17.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 277761790 | 8.63% | 223825 |
| chr1 | 26689162 | 10.72% | 20863 |
| chr1_KI270711v1_random | 7379 | 17.48% | 7 |
| chr2 | 21961872 | 9.07% | 19209 |
| chr3 | 16723259 | 8.43% | 14519 |
| chr4 | 11279355 | 5.93% | 11154 |
| chr5 | 14585919 | 8.03% | 12882 |
| chr6 | 11844701 | 6.93% | 11549 |
| chr7 | 14328085 | 8.99% | 12379 |
| chr8 | 12762760 | 8.79% | 9753 |
| chr9 | 11873792 | 8.58% | 9627 |
| chr10 | 12905848 | 9.65% | 10969 |
| chr11 | 12652085 | 9.37% | 9344 |
| chr12 | 14336084 | 10.76% | 10897 |
| chr13 | 6104180 | 5.34% | 5683 |
| chr14 | 8763405 | 8.19% | 7665 |
| chr14_GL000194v1_random | 3248 | 1.70% | 3 |
| chr15 | 10147796 | 9.95% | 8140 |
| chr16 | 12304181 | 13.62% | 8000 |
| chr17 | 15151912 | 18.20% | 10254 |
| chr17_GL000205v2_random | 3263 | 1.76% | 6 |
| chr18 | 5139014 | 6.39% | 4860 |
| chr19 | 14894543 | 25.41% | 7437 |
| chr20 | 7735773 | 12.00% | 5342 |
| chr21 | 3380648 | 7.24% | 2639 |
| chr22 | 6553534 | 12.90% | 4165 |
| chrUn_GL000195v1 | 9654 | 5.28% | 20 |
| chrUn_GL000219v1 | 21831 | 12.18% | 26 |
| chrUn_KI270519v1 | 350 | 0.25% | 1 |
| chrUn_KI270744v1 | 508 | 0.30% | 2 |
| chrX | 5596174 | 3.59% | 6426 |
| chrY | 1475 | <0.01% | 4 |
| 3335 contigs with no values (127989123 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 223825 | 250 | 68491 | 1240.98 | 576 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF501RFI.bed.gz | 4.55 MB | f860c64d7cef801b8b81bd055f93b58c |
| ENCFF501RFI.tabix.bed.gz | 2.17 MB | ddd35d7b1e5ddb33f2ced87543aad94a |
| ENCFF501RFI.tabix.bed.gz.tbi | 192.79 KB | 006cd0158e0e52d0f6edc4cb69621f20 |
| genomic_resource.yaml | 3.12 KB | f228ef2f2ad2b2d71606a4edd009e68c |
| statistics/ |