Resource

Id Histone_ChIP-seq/ENCSR238LEGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR238LEG [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR238LEG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001134/
  • biosample_summary: Homo sapiens skeletal muscle tissue tissue
  • date_created: 2015-09-15T19:51:56.052727+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR238LEG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR238LEG float

Histone_ChIP-seq_ENCSR238LEG
Histone_ChIP-seq ENCSR238LEG [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR238LEG [1.72, 64.2]
n
45,901,075
mean
17
sd
11.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 459010751.43% 54983
chr1 4474800 1.80% 5138
chr2 3265016 1.35% 3988
chr3 2788806 1.41% 3221
chr4 1949666 1.02% 2310
chr5 2283155 1.26% 2653
chr6 2783082 1.63% 3128
chr7 2141184 1.34% 2640
chr8 1767075 1.22% 2181
chr9 1851250 1.34% 2271
chr10 2110928 1.58% 2628
chr11 2388359 1.77% 2770
chr12 2558462 1.92% 2912
chr13 993424 0.87% 1220
chr14 1447099 1.35% 1669
chr15 1478759 1.45% 1776
chr16 1604660 1.78% 2010
chr17 2388956 2.87% 2860
chr18 826362 1.03% 1042
chr19 3113708 5.31% 4074
chr20 1088223 1.69% 1344
chr21 484173 1.04% 645
chr22 875069 1.72% 1063
chrX 1188267 0.76% 1383
chrY 50592 0.09% 57
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54983 150 10401 834.82 557
global segment-length histogram

Files

Filename Size md5
ENCFF589VJH.bed.gz 1.2 MB 5f0c42e6678cb58be876ecb4d2434ba9
ENCFF589VJH.tabix.bed.gz 571.89 KB 6405481fae00bb06dcd35fba8f514e7c
ENCFF589VJH.tabix.bed.gz.tbi 220.86 KB afba2f963354fe20cafd1acccac9c855
genomic_resource.yaml 1.44 KB a2e37a6c5c1ad723112e20a7c1d25c4e
statistics/