Resource
| Id | Histone_ChIP-seq/ENCSR237OBF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR237OBF [biosample_summary="Homo sapiens HUES6" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN996YSA|/analyses/ENCAN996YSA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN996YSA|/analyses/ENCAN996YSA/} has in progress subobject document {c8768818-7ec1-457a-a8be-6d90486285df|/documents/c8768818-7ec1-457a-a8be-6d90486285df/} audit_not_compliant: Processed alignments file {ENCFF063LIX|/files/ENCFF063LIX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24765390 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF359EMN|/files/ENCFF359EMN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27935477 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR237OBF | float |
Histone_ChIP-seq_ENCSR237OBF |
Histone_ChIP-seq ENCSR237OBF [biosample_summary="Homo sapiens HUES6" and target="H3K36me3"]
|
 |
[1.63, 36.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 156119690 | 4.85% | 154307 |
| chr1 | 15321504 | 6.15% | 14588 |
| chr2 | 11637262 | 4.80% | 11742 |
| chr3 | 9512277 | 4.80% | 9648 |
| chr4 | 6717238 | 3.53% | 7209 |
| chr5 | 8204348 | 4.52% | 8052 |
| chr6 | 7122649 | 4.17% | 7139 |
| chr7 | 7471276 | 4.69% | 7854 |
| chr8 | 5678887 | 3.91% | 5812 |
| chr9 | 6639558 | 4.80% | 6548 |
| chr10 | 6418710 | 4.80% | 6515 |
| chr11 | 7540930 | 5.58% | 7062 |
| chr12 | 8594726 | 6.45% | 8254 |
| chr13 | 3378292 | 2.95% | 3739 |
| chr14 | 5223704 | 4.88% | 5357 |
| chr15 | 5478160 | 5.37% | 5388 |
| chr16 | 6350432 | 7.03% | 5782 |
| chr17 | 8225527 | 9.88% | 7707 |
| chr18 | 2821286 | 3.51% | 3129 |
| chr19 | 8265629 | 14.10% | 7783 |
| chr20 | 4369325 | 6.78% | 3899 |
| chr21 | 1883552 | 4.03% | 1723 |
| chr22 | 3743994 | 7.37% | 3381 |
| chrX | 5520424 | 3.54% | 5996 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 154307 | 158 | 50817 | 1011.75 | 607 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF705REH.bed.gz | 3.31 MB | c4ffc7d6bd093148ab2a1c1fcb38bf94 |
| ENCFF705REH.tabix.bed.gz | 1.53 MB | 5a8960360c5251c483baed0526aec807 |
| ENCFF705REH.tabix.bed.gz.tbi | 177.03 KB | b75e953fc91be24a5347226ac9e65b40 |
| genomic_resource.yaml | 2.61 KB | ae68cc863ee5ce377bda762bd8d94501 |
| statistics/ |