Histone_ChIP-seq_ENCSR236YPE
Histone_ChIP-seq ENCSR236YPE [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR236YPE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR236YPE [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN116HRR|/analyses/ENCAN116HRR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF305DFQ|/files/ENCFF305DFQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 18687998 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF969XFC|/files/ENCFF969XFC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 17230273 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305DFQ|/files/ENCFF305DFQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR236YPE | float |
Histone_ChIP-seq_ENCSR236YPE |
Histone_ChIP-seq ENCSR236YPE [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K36me3"]
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[1.53, 17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803FDJ.bed.gz | 1.55 MB | 066f86ffe2b0c0c966e17bf0427869c4 |
| ENCFF803FDJ.bed.gz.dvc | 101.0 B | ab0fe5f2a35d1bcb3ac9ff0cf314e4c2 |
| ENCFF803FDJ.tabix.bed.gz | 749.74 KB | 9034e4655bdb35ba24928323cdc33418 |
| ENCFF803FDJ.tabix.bed.gz.dvc | 106.0 B | 3b34e027f8b89d3cd38e1ea72bd7a9d3 |
| ENCFF803FDJ.tabix.bed.gz.tbi | 219.16 KB | 384bc046cf9212d1be5dd4a97d4ef1da |
| ENCFF803FDJ.tabix.bed.gz.tbi.dvc | 110.0 B | fc755e8b569704156f101d01fa8a214c |
| genomic_resource.yaml | 3.3 KB | 36dd5af44f1518fff87581ddffd8c5b0 |
| genomic_resource_original.yaml | 3.17 KB | 165311e36152bcb47558455003221bbe |
| statistics/ |