Resource

Id Histone_ChIP-seq/ENCSR236XRRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR236XRR [biosample_summary="Homo sapiens iPS-15b" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR236XRR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007102/
  • biosample_summary: Homo sapiens iPS-15b
  • date_created: 2015-09-15T19:51:30.610533+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR236XRR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR236XRR float

Histone_ChIP-seq_ENCSR236XRR
Histone_ChIP-seq ENCSR236XRR [biosample_summary="Homo sapiens iPS-15b" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR236XRR [1.8, 83.7]
n
48,832,812
mean
21.5
sd
12.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 488328121.52% 42821
chr1 4762449 1.91% 4153
chr2 3305468 1.36% 2820
chr3 2617195 1.32% 2122
chr4 1982941 1.04% 1635
chr5 2409985 1.33% 2037
chr6 2986155 1.75% 2454
chr7 2341149 1.47% 2140
chr8 1859933 1.28% 1606
chr9 1916341 1.38% 1716
chr10 2086178 1.56% 1824
chr11 2625727 1.94% 2239
chr12 2527177 1.90% 2216
chr13 1034497 0.90% 882
chr14 1584888 1.48% 1327
chr15 1595241 1.56% 1413
chr16 1818946 2.01% 1696
chr17 2786054 3.35% 2470
chr18 830562 1.03% 728
chr19 3207195 5.47% 3087
chr20 1315708 2.04% 1201
chr21 464621 0.99% 430
chr22 963773 1.90% 936
chrX 1806677 1.16% 1680
chrY 3952 0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42821 170 10051 1140.39 859
global segment-length histogram

Files

Filename Size md5
ENCFF737OEG.bed.gz 998.79 KB 292505eb5db03300879302a4a99c5cd8
ENCFF737OEG.tabix.bed.gz 458.67 KB 10476220501557a7c5de1221ba962ecc
ENCFF737OEG.tabix.bed.gz.tbi 186.55 KB 6ff348cc992a0e6d58a198be35e75a35
genomic_resource.yaml 1.87 KB 4ee767c0c738a220e855cbed4d8a44ac
statistics/