Histone_ChIP-seq_ENCSR235ZBF
Histone_ChIP-seq ENCSR235ZBF [biosample_summary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR235ZBF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR235ZBF [biosamplesummary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN897TOA|/analyses/ENCAN897TOA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN897TOA|/analyses/ENCAN897TOA/} has in progress subobject document {b4db777d-d766-4d30-a7e7-932df9a1dab5|/documents/b4db777d-d766-4d30-a7e7-932df9a1dab5/} audit_warning: Processed alignments file {ENCFF500MVV|/files/ENCFF500MVV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 16456628 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF500MVV|/files/ENCFF500MVV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF500MVV|/files/ENCFF500MVV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR235ZBF | float |
Histone_ChIP-seq_ENCSR235ZBF |
Histone_ChIP-seq ENCSR235ZBF [biosample_summary="Homo sapiens spleen tissue male adult (34 years)" and target="H3K27ac"]
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[1.95, 122] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF145NKN.bed.gz | 1.49 MB | 37ea4d41239b606c787db0b326373f33 |
| ENCFF145NKN.bed.gz.dvc | 101.0 B | 564054f6aa7eea2eda932594bfceb7ae |
| ENCFF145NKN.tabix.bed.gz | 689.6 KB | f0864ef95326117f874979c5d02b0e0b |
| ENCFF145NKN.tabix.bed.gz.dvc | 106.0 B | 2a2a44e2921c22ed8802172f6f21d8cc |
| ENCFF145NKN.tabix.bed.gz.tbi | 215.79 KB | e3f584cb295cf9ca7fa0a49103a427cc |
| ENCFF145NKN.tabix.bed.gz.tbi.dvc | 110.0 B | f95e0e921f657248f26ada50843fefa8 |
| genomic_resource.yaml | 3.45 KB | d3736261d411ef7416b1f9bae2c0ac28 |
| genomic_resource_original.yaml | 3.31 KB | 56917d2901db6b11f6c2250fa1230f68 |
| statistics/ |