Resource

Id Histone_ChIP-seq/ENCSR235BEScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR235BES [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR235BES
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years)
  • date_created: 2021-08-25T18:07:05.647515+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR235BES
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR235BES float

Histone_ChIP-seq_ENCSR235BES
Histone_ChIP-seq ENCSR235BES [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR235BES [1.95, 37.4]
n
37,405,276
mean
15.3
sd
6.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 374052761.16% 24021
chr1 3671628 1.47% 2326
chr2 2563805 1.06% 1617
chr3 2208918 1.11% 1348
chr4 1535504 0.81% 926
chr5 1868695 1.03% 1146
chr6 2116863 1.24% 1335
chr7 1796411 1.13% 1222
chr8 1475083 1.02% 926
chr9 1535772 1.11% 984
chr10 1611107 1.20% 1024
chr11 2031548 1.50% 1229
chr12 1963331 1.47% 1205
chr13 829910 0.73% 517
chr14 1218813 1.14% 756
chr15 1172543 1.15% 771
chr16 1446787 1.60% 965
chr17 2106802 2.53% 1345
chr18 683218 0.85% 451
chr19 2341745 3.99% 1659
chr20 973939 1.51% 651
chr21 354268 0.76% 234
chr22 844604 1.66% 583
chrX 1053982 0.68% 801
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24021 225 13076 1557.19 1377
global segment-length histogram

Files

Filename Size md5
ENCFF869GIR.bed.gz 566.11 KB af58e2298f1d660c5d2f36271715db3a
ENCFF869GIR.tabix.bed.gz 265.19 KB 870e336addf5cfe584ede3f1c32a0db7
ENCFF869GIR.tabix.bed.gz.tbi 150.88 KB e5e35f36c37e301ad76ab3ccbf033107
genomic_resource.yaml 1.7 KB b801e7241db00108f42c6acd8387a10a
statistics/