Resource

Id Histone_ChIP-seq/ENCSR233LCTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR233LCT [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR233LCT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007610/
  • biosample_summary: Homo sapiens tibial artery tissue female adult (53 years)
  • date_created: 2016-10-19T23:10:35.947662+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR233LCT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR233LCT float

Histone_ChIP-seq_ENCSR233LCT
Histone_ChIP-seq ENCSR233LCT [biosample_summary="Homo sapiens tibial artery tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR233LCT [1.79, 5.92]
n
2,175,825
mean
3.07
sd
0.507

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 21758250.07% 3755
chr1 245684 0.10% 418
chr2 152326 0.06% 265
chr3 109299 0.06% 201
chr4 37814 0.02% 77
chr5 79392 0.04% 146
chr6 74731 0.04% 144
chr7 88369 0.06% 151
chr8 62976 0.04% 116
chr9 120149 0.09% 202
chr10 124742 0.09% 222
chr11 144909 0.11% 236
chr12 112906 0.08% 192
chr13 32965 0.03% 61
chr14 74762 0.07% 134
chr15 75165 0.07% 135
chr16 109765 0.12% 175
chr17 167993 0.20% 277
chr18 24295 0.03% 45
chr19 151781 0.26% 250
chr20 71498 0.11% 119
chr21 18928 0.04% 36
chr22 89984 0.18% 142
chrX 5392 <0.01% 11
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3755 235 2337 579.45 515
global segment-length histogram

Files

Filename Size md5
ENCFF335OXO.bed.gz 76.97 KB e736977f0a2b6b07193ae8f0b608157c
ENCFF335OXO.tabix.bed.gz 40.58 KB 07d4ed83ec6f726ab88e272b0821e91d
ENCFF335OXO.tabix.bed.gz.tbi 34.74 KB af1b2ebe06b4119eb87a369eb490755b
genomic_resource.yaml 1.73 KB 41a4d99afa7e22ef0ee7ad4f548f0352
statistics/