Resource

Id Histone_ChIP-seq/ENCSR233EDVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR233EDV [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR233EDV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (59 years)
  • date_created: 2021-01-28T22:01:57.403762+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR233EDV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR233EDV float

Histone_ChIP-seq_ENCSR233EDV
Histone_ChIP-seq ENCSR233EDV [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR233EDV [1.65, 7.69]
n
32,427,631
mean
3.41
sd
0.752

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 324276311.01% 41598
chr1 3559219 1.43% 4471
chr2 2651939 1.09% 3397
chr3 2096761 1.06% 2723
chr4 1357782 0.71% 1861
chr5 1698798 0.94% 2205
chr6 1719453 1.01% 2336
chr7 1567264 0.98% 2062
chr8 1480902 1.02% 1942
chr9 1609051 1.16% 1975
chr10 1612650 1.21% 2067
chr11 1786427 1.32% 2253
chr12 1479407 1.11% 1971
chr13 782864 0.68% 1042
chr14 1187340 1.11% 1489
chr15 1205490 1.18% 1500
chr16 1237566 1.37% 1524
chr17 1652246 1.98% 2014
chr18 625793 0.78% 815
chr19 984205 1.68% 1256
chr20 875975 1.36% 1075
chr21 290174 0.62% 404
chr22 794296 1.56% 939
chrX 172029 0.11% 277
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41598 200 8224 779.55 652
global segment-length histogram

Files

Filename Size md5
ENCFF405JMB.bed.gz 823.75 KB 2ecde7ab6e9559b2c7cbc070c227d6b1
ENCFF405JMB.tabix.bed.gz 425.16 KB df61a495363d7df5100b0b9489834dd1
ENCFF405JMB.tabix.bed.gz.tbi 184.85 KB c025dcd804a666a4a2dd51d7cfd6796f
genomic_resource.yaml 1.5 KB 86e3fa38ffa0d31b73543b649ed30dbb
statistics/