Resource
| Id | Histone_ChIP-seq/ENCSR230KKL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR230KKL [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN961WEY|/analyses/ENCAN961WEY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF939GYM|/files/ENCFF939GYM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21383869 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR230KKL | float |
Histone_ChIP-seq_ENCSR230KKL |
Histone_ChIP-seq ENCSR230KKL [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27me3"]
|
 |
[1.67, 56.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 89131366 | 2.77% | 148109 |
| chr1 | 7865167 | 3.16% | 12519 |
| chr1_KI270712v1_random | 7336 | 4.17% | 14 |
| chr1_KI270713v1_random | 5223 | 12.82% | 7 |
| chr1_KI270714v1_random | 2991 | 7.17% | 7 |
| chr2 | 6215275 | 2.57% | 10410 |
| chr3 | 4973718 | 2.51% | 9691 |
| chr4 | 4067421 | 2.14% | 7712 |
| chr5 | 5403321 | 2.98% | 9096 |
| chr6 | 5291318 | 3.10% | 9008 |
| chr7 | 3881962 | 2.44% | 6287 |
| chr8 | 4067079 | 2.80% | 7630 |
| chr9 | 3968537 | 2.87% | 6346 |
| chr10 | 5055963 | 3.78% | 8343 |
| chr11 | 5908099 | 4.37% | 9629 |
| chr12 | 4446259 | 3.34% | 7612 |
| chr13 | 2188108 | 1.91% | 4044 |
| chr14 | 2812366 | 2.63% | 4675 |
| chr15 | 3146414 | 3.08% | 5189 |
| chr16 | 2646764 | 2.93% | 3939 |
| chr17 | 4178910 | 5.02% | 5704 |
| chr17_GL000205v2_random | 40272 | 21.70% | 31 |
| chr17_KI270729v1_random | 1305 | 0.46% | 2 |
| chr18 | 2829674 | 3.52% | 5170 |
| chr19 | 2821599 | 4.81% | 3819 |
| chr20 | 3471584 | 5.39% | 5206 |
| chr21 | 956958 | 2.05% | 1532 |
| chr22 | 2141896 | 4.21% | 3020 |
| chr22_KI270733v1_random | 2182 | 1.21% | 8 |
| chr22_KI270738v1_random | 1285 | 1.29% | 3 |
| chrUn_GL000219v1 | 14768 | 8.24% | 27 |
| chrUn_GL000220v1 | 702 | 0.43% | 2 |
| chrUn_GL000224v1 | 222 | 0.12% | 1 |
| chrUn_KI270749v1 | 219 | 0.14% | 1 |
| chrX | 696210 | 0.45% | 1386 |
| chrY | 20259 | 0.04% | 39 |
| 3331 contigs with no values (127393551 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148109 | 155 | 34332 | 601.8 | 412 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF733SYC.bed.gz | 3.0 MB | 0b77d9d847374318df02224cbacf2b19 |
| ENCFF733SYC.tabix.bed.gz | 1.43 MB | f644ef5e6e1fbed0aeb0aa22b2a47a16 |
| ENCFF733SYC.tabix.bed.gz.tbi | 315.08 KB | ef531882d586d873ebe15608f11dbe09 |
| genomic_resource.yaml | 1.96 KB | cdc8b7762954a23b1f321e90cdcb654d |
| statistics/ |