Histone_ChIP-seq_ENCSR230IMS
Histone_ChIP-seq ENCSR230IMS [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K27ac"]
×
| Id: | Histone_ChIP-seq/ENCSR230IMS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR230IMS [biosamplesummary="Homo sapiens liver tissue male adult (31 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (31 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN882LNG|/analyses/ENCAN882LNG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF252RFB|/files/ENCFF252RFB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15875266 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF252RFB|/files/ENCFF252RFB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF252RFB|/files/ENCFF252RFB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.74. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR230IMS | float |
Histone_ChIP-seq_ENCSR230IMS |
Histone_ChIP-seq ENCSR230IMS [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K27ac"]
|
|
[1.91, 76.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF976KNB.bed.gz | 1.54 MB | fd1987cedc47bd7f8c92532ecd21c3de |
| ENCFF976KNB.bed.gz.dvc | 101.0 B | 2f952a34d70b7a03a182ed530a7650da |
| ENCFF976KNB.tabix.bed.gz | 726.69 KB | 67a710117e65d11ed8f8466aaf03c3b5 |
| ENCFF976KNB.tabix.bed.gz.dvc | 106.0 B | df269e1ebb340c356b03d20b926aff11 |
| ENCFF976KNB.tabix.bed.gz.tbi | 220.81 KB | c995a3aa976045996817b6f2248d708e |
| ENCFF976KNB.tabix.bed.gz.tbi.dvc | 110.0 B | 6ba941ebd8b5957997b9a143a0137ad8 |
| genomic_resource.yaml | 3.24 KB | acd5d643cc5a0805adb24cbd55de7f98 |
| genomic_resource_original.yaml | 3.11 KB | 89cb6a91a96885fb9b02a28bea5609e8 |
| statistics/ |