Resource

Id Histone_ChIP-seq/ENCSR229KWPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR229KWP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR229KWP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004648/
  • biosample_summary: Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)
  • date_created: 2016-10-22T16:08:42.207231+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR229KWP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR229KWP float

Histone_ChIP-seq_ENCSR229KWP
Histone_ChIP-seq ENCSR229KWP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR229KWP [1.58, 10.1]
n
109,479,100
mean
3.63
sd
1.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1094791003.40% 116969
chr1 11212836 4.50% 11702
chr2 8757843 3.62% 9469
chr3 7768323 3.92% 8329
chr4 4138148 2.18% 4970
chr5 5649111 3.11% 6350
chr6 5641064 3.30% 6528
chr7 5089872 3.19% 5801
chr8 4508098 3.11% 5119
chr9 4992015 3.61% 5100
chr10 6115912 4.57% 6330
chr11 6050770 4.48% 6104
chr12 5493316 4.12% 5704
chr13 2526165 2.21% 2887
chr14 3742375 3.50% 3855
chr15 4079563 4.00% 4291
chr16 3781749 4.19% 3967
chr17 5867733 7.05% 5567
chr18 1968294 2.45% 2394
chr19 4146019 7.07% 4061
chr20 3151976 4.89% 3220
chr21 1064221 2.28% 1193
chr22 2954115 5.81% 2854
chrX 779582 0.50% 1174
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116969 225 37018 935.97 671
global segment-length histogram

Files

Filename Size md5
ENCFF908FXI.bed.gz 2.47 MB 6781a8ccb7e22901dd8213a1198aa866
ENCFF908FXI.tabix.bed.gz 1.19 MB 4753485805da15127434fa22a9e64642
ENCFF908FXI.tabix.bed.gz.tbi 292.61 KB 233747bc2e8cf8b638e05038b6958cd3
genomic_resource.yaml 1.77 KB 71e01588e376b1cc0903622bb68ea119
statistics/