Histone_ChIP-seq_ENCSR225VCV
Histone_ChIP-seq ENCSR225VCV [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR225VCV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR225VCV [biosamplesummary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K36me3"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN291EZU|/analyses/ENCAN291EZU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF772BIG|/files/ENCFF772BIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17438125 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF772BIG|/files/ENCFF772BIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF772BIG|/files/ENCFF772BIG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR225VCV | float |
Histone_ChIP-seq_ENCSR225VCV |
Histone_ChIP-seq ENCSR225VCV [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K36me3"]
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[1.47, 10.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF487XSW.bed.gz | 1.04 MB | 6990952d13c4a965d1dfd705d69555f3 |
| ENCFF487XSW.bed.gz.dvc | 101.0 B | 4762c244a2221f4940564c86a8894f70 |
| ENCFF487XSW.tabix.bed.gz | 558.5 KB | 7994e87ae42c7ba9109386ecc1e90767 |
| ENCFF487XSW.tabix.bed.gz.dvc | 106.0 B | 144e27f6c0c959a5a5201c4489df76e0 |
| ENCFF487XSW.tabix.bed.gz.tbi | 123.75 KB | 7b48bffb9495b24a41510c2abf58284c |
| ENCFF487XSW.tabix.bed.gz.tbi.dvc | 110.0 B | c5f1ea3b5fcfdc7e229db957f4dd9d7d |
| genomic_resource.yaml | 3.24 KB | 8de0c338d82cf7114f3c3a1409f5b496 |
| genomic_resource_original.yaml | 3.1 KB | e4a5c7605288fdb1efb56bb9cf3a71f8 |
| statistics/ |