Histone_ChIP-seq_ENCSR224STY
Histone_ChIP-seq ENCSR224STY [biosample_summary="Homo sapiens breast epithelium tissue male adult (37 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR224STY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR224STY [biosamplesummary="Homo sapiens breast epithelium tissue male adult (37 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN107KLL|/analyses/ENCAN107KLL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN107KLL|/analyses/ENCAN107KLL/} has in progress subobject document {14f29e4e-2c7d-4a79-8854-05fa19e48fce|/documents/14f29e4e-2c7d-4a79-8854-05fa19e48fce/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF345JHQ|/files/ENCFF345JHQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF345JHQ|/files/ENCFF345JHQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR224STY | float |
Histone_ChIP-seq_ENCSR224STY |
Histone_ChIP-seq ENCSR224STY [biosample_summary="Homo sapiens breast epithelium tissue male adult (37 years)" and target="H3K4me3"]
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[2.11, 100] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF212SAT.bed.gz | 635.32 KB | bdd3c597b2778a505f5edf71d5f8d16e |
| ENCFF212SAT.bed.gz.dvc | 100.0 B | 85f1f8d99369b16e987ceaf4081b8715 |
| ENCFF212SAT.tabix.bed.gz | 275.01 KB | 0310d81efc510a58042c4a22107c6a78 |
| ENCFF212SAT.tabix.bed.gz.dvc | 106.0 B | dad0b6b4e974f550ad2c2315ecfa275e |
| ENCFF212SAT.tabix.bed.gz.tbi | 157.59 KB | 949accb9fde39076369affcbaaafcaf8 |
| ENCFF212SAT.tabix.bed.gz.tbi.dvc | 110.0 B | aa2df37a63196f41955404364b343467 |
| genomic_resource.yaml | 3.0 KB | 059ba62c0940b3797a241a036ef21e96 |
| genomic_resource_original.yaml | 2.85 KB | ec87085150eb3901f38f751263ba473a |
| statistics/ |