Resource

Id Histone_ChIP-seq/ENCSR224LFYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR224LFY [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR224LFY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2015-09-15T19:48:35.929719+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR224LFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR224LFY float

Histone_ChIP-seq_ENCSR224LFY
Histone_ChIP-seq ENCSR224LFY [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR224LFY [1.78, 13.1]
n
3,696,282
mean
4.54
sd
1.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 36962820.11% 5833
chr1 182355 0.07% 343
chr2 172855 0.07% 310
chr3 164555 0.08% 291
chr4 177975 0.09% 290
chr5 153581 0.08% 279
chr6 102186 0.06% 204
chr7 200956 0.13% 320
chr8 116701 0.08% 213
chr9 114295 0.08% 186
chr10 113701 0.08% 198
chr11 91749 0.07% 178
chr12 210616 0.16% 325
chr13 58801 0.05% 122
chr14 79805 0.07% 153
chr15 104692 0.10% 153
chr16 127180 0.14% 198
chr17 77745 0.09% 129
chr18 53152 0.07% 102
chr19 1218769 2.08% 1551
chr20 44831 0.07% 75
chr21 51156 0.11% 90
chr22 33042 0.07% 52
chrX 28308 0.02% 43
chrY 17276 0.03% 28
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5833 220 6996 633.68 507
global segment-length histogram

Files

Filename Size md5
ENCFF250CEK.bed.gz 118.1 KB f442f02295915eb256478dab7f91583a
ENCFF250CEK.tabix.bed.gz 60.56 KB 572dce531c5eb9f41f916d470f199285
ENCFF250CEK.tabix.bed.gz.tbi 39.21 KB f327efe93856e719aa67e917757f9e06
genomic_resource.yaml 1.51 KB 849c062d1d136823d00a45ea56182831
statistics/