Resource

Id Histone_ChIP-seq/ENCSR223UPCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR223UPC [biosample_summary="Homo sapiens HUES48" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR223UPC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007083/
  • biosample_summary: Homo sapiens HUES48
  • date_created: 2015-09-15T19:51:21.408544+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR223UPC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR223UPC float

Histone_ChIP-seq_ENCSR223UPC
Histone_ChIP-seq ENCSR223UPC [biosample_summary="Homo sapiens HUES48" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR223UPC [2.05, 139]
n
63,803,640
mean
19.5
sd
19.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 638036401.98% 79816
chr1 6029730 2.42% 7331
chr2 4770684 1.97% 6110
chr3 4412961 2.23% 5509
chr4 3269938 1.72% 4141
chr5 3587905 1.98% 4461
chr6 4016864 2.35% 4792
chr7 3452150 2.17% 4358
chr8 2743371 1.89% 3591
chr9 2551275 1.84% 3238
chr10 2950788 2.21% 3679
chr11 3280760 2.43% 4089
chr12 3305331 2.48% 3995
chr13 1725224 1.51% 2181
chr14 1944388 1.82% 2479
chr15 1936114 1.90% 2434
chr16 1991834 2.20% 2528
chr17 2713766 3.26% 3271
chr18 1487801 1.85% 1922
chr19 2172535 3.71% 2643
chr20 1587396 2.46% 2025
chr21 657379 1.41% 843
chr22 1183266 2.33% 1528
chrX 2032180 1.30% 2668
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79816 170 14994 799.38 551
global segment-length histogram

Files

Filename Size md5
ENCFF587DLO.bed.gz 1.84 MB 4d7b113dea55a067fd3dd3c547bc82ac
ENCFF587DLO.tabix.bed.gz 848.37 KB 508523c2929e2d0c9e57380703bdd09e
ENCFF587DLO.tabix.bed.gz.tbi 320.42 KB 73ac222ae510b202cbf67dc863c62ee4
genomic_resource.yaml 1.88 KB 9234a10f69a88aa74f31ce5f4aa3ac20
statistics/