Resource

Id Histone_ChIP-seq/ENCSR223APPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR223APP [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR223APP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell
  • date_created: 2015-09-15T19:49:05.486224+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR223APP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR223APP float

Histone_ChIP-seq_ENCSR223APP
Histone_ChIP-seq ENCSR223APP [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR223APP [1.95, 40.9]
n
38,015,323
mean
13.8
sd
7.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 380153231.18% 28658
chr1 3892788 1.56% 2923
chr2 2711583 1.12% 2131
chr3 2094786 1.06% 1601
chr4 1323464 0.70% 967
chr5 1769480 0.97% 1251
chr6 2316568 1.36% 1679
chr7 1715714 1.08% 1324
chr8 1299282 0.90% 1020
chr9 1445215 1.04% 1087
chr10 1629035 1.22% 1234
chr11 2080706 1.54% 1501
chr12 2019123 1.52% 1475
chr13 834054 0.73% 640
chr14 1440548 1.35% 1051
chr15 1185147 1.16% 874
chr16 1464074 1.62% 1136
chr17 2274354 2.73% 1687
chr18 595855 0.74% 449
chr19 2496491 4.26% 1974
chr20 962988 1.49% 735
chr21 402694 0.86% 324
chr22 877434 1.73% 682
chrX 1136799 0.73% 880
chrY 47141 0.08% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28658 235 17190 1326.52 1060
global segment-length histogram

Files

Filename Size md5
ENCFF918GSM.bed.gz 731.61 KB c54f957a5ef62d1def992b5acab98c5d
ENCFF918GSM.tabix.bed.gz 323.39 KB 7735de0cf10c4e03cc34cf610fe65a5c
ENCFF918GSM.tabix.bed.gz.tbi 149.12 KB 9ada160e83a24f9f5ae919aaddfb2b7a
genomic_resource.yaml 1.46 KB a8f1709d7f0bc43558c90333c4eb86c3
statistics/