Resource

Id Histone_ChIP-seq/ENCSR221ZRMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR221ZRM [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR221ZRM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000088/
  • biosample_summary: Homo sapiens trophoblast tissue female embryo (20 weeks)
  • date_created: 2017-03-22T16:17:02.759362+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR221ZRM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR221ZRM float

Histone_ChIP-seq_ENCSR221ZRM
Histone_ChIP-seq ENCSR221ZRM [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR221ZRM [1.54, 11.9]
n
35,664,700
mean
4.36
sd
1.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 356647001.11% 47089
chr1 3371513 1.35% 4347
chr2 1820760 0.75% 2514
chr3 983034 0.50% 1383
chr4 828245 0.44% 1065
chr5 1371364 0.76% 1844
chr6 1150488 0.67% 1552
chr7 1481388 0.93% 1937
chr8 1027055 0.71% 1417
chr9 1130873 0.82% 1474
chr10 2113017 1.58% 2832
chr11 2095390 1.55% 2727
chr12 1563602 1.17% 2058
chr13 577464 0.50% 799
chr14 985240 0.92% 1304
chr15 927688 0.91% 1278
chr16 1854971 2.05% 2408
chr17 1604663 1.93% 2047
chr18 568877 0.71% 782
chr19 1717021 2.93% 2165
chr20 1526433 2.37% 2004
chr21 399825 0.86% 532
chr22 919197 1.81% 1172
chrX 5646592 3.62% 7448
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47089 250 6452 757.39 643
global segment-length histogram

Files

Filename Size md5
ENCFF515GRT.bed.gz 1006.69 KB 8b651e8d934d69e6da9a65712af23ef4
ENCFF515GRT.tabix.bed.gz 477.81 KB d161600575904a2e33dd9d21de7b6686
ENCFF515GRT.tabix.bed.gz.tbi 156.04 KB e924c8f6241bf9aa34f25109efe28462
genomic_resource.yaml 2.02 KB c887f58db4622ca9baace938826a161b
statistics/