Histone_ChIP-seq_ENCSR221EIS
Histone_ChIP-seq ENCSR221EIS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR221EIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR221EIS [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN893KUK|/analyses/ENCAN893KUK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF117BNJ|/files/ENCFF117BNJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 26925866 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117BNJ|/files/ENCFF117BNJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117BNJ|/files/ENCFF117BNJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.70. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR221EIS | float |
Histone_ChIP-seq_ENCSR221EIS |
Histone_ChIP-seq ENCSR221EIS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K36me3"]
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[1.73, 19.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF239JVW.bed.gz | 2.65 MB | 9d3b0aa8fb517d532585859b400d16bb |
| ENCFF239JVW.bed.gz.dvc | 101.0 B | 7c5ff74721f17e3fb89dbb529a054ab5 |
| ENCFF239JVW.tabix.bed.gz | 1.27 MB | 386adc83daedab2e91b9f32fbae4d489 |
| ENCFF239JVW.tabix.bed.gz.dvc | 107.0 B | 6865db921f627614baaef0c83e49cb77 |
| ENCFF239JVW.tabix.bed.gz.tbi | 178.62 KB | 5f03d10537dd6f6ca47a329f3bf4283c |
| ENCFF239JVW.tabix.bed.gz.tbi.dvc | 110.0 B | 25ff0b2adbb612070959115ec80c11f6 |
| genomic_resource.yaml | 3.29 KB | bfcedbb63906e7b7b76789ac90d8627b |
| genomic_resource_original.yaml | 3.14 KB | 5687e708d31d66d6105d9190c845a268 |
| statistics/ |