Resource

Id Histone_ChIP-seq/ENCSR220XCDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR220XCD [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR220XCD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000182/
  • biosample_summary: Homo sapiens hepatocyte originated from H9
  • date_created: 2016-04-11T19:02:26.434194+00:00
  • date_released: 2016-04-27
  • doi: 10.17989/ENCSR220XCD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR220XCD float

Histone_ChIP-seq_ENCSR220XCD
Histone_ChIP-seq ENCSR220XCD [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR220XCD [1.54, 42.2]
n
105,980,784
mean
10.6
sd
6.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1059807843.29% 83098
chr1 10143397 4.07% 7761
chr2 7875892 3.25% 6401
chr3 6423436 3.24% 5183
chr4 5151065 2.71% 4178
chr5 5595531 3.08% 4539
chr6 6678638 3.91% 5268
chr7 5296362 3.32% 4241
chr8 4469471 3.08% 3709
chr9 4544017 3.28% 3577
chr10 4891753 3.66% 3996
chr11 5495069 4.07% 4112
chr12 5383008 4.04% 4123
chr13 2598760 2.27% 2240
chr14 3468150 3.24% 2685
chr15 3413198 3.35% 2703
chr16 3753799 4.16% 2870
chr17 5253355 6.31% 3709
chr18 2267177 2.82% 1907
chr19 4590451 7.83% 3175
chr20 2703687 4.20% 2110
chr21 1127654 2.41% 949
chr22 2006289 3.95% 1541
chrX 2850305 1.83% 2120
chrY 320 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83098 195 40208 1275.37 867
global segment-length histogram

Files

Filename Size md5
ENCFF466FLE.bed.gz 2.21 MB 0458d07f08d7b70494b31a27b2e2a4b6
ENCFF466FLE.tabix.bed.gz 941.47 KB d3849e63f5bee51e7ad9c29a27fb3887
ENCFF466FLE.tabix.bed.gz.tbi 336.53 KB 58337692aaf08575e0bcbdc6892869c4
genomic_resource.yaml 1.7 KB b36ed2ff8cf29c06b4bff1c6bf852c12
statistics/