Resource

Id Histone_ChIP-seq/ENCSR219QSMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR219QSM [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR219QSM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue male adult (54 years)
  • date_created: 2017-12-06T21:13:33.984216+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR219QSM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR219QSM float

Histone_ChIP-seq_ENCSR219QSM
Histone_ChIP-seq ENCSR219QSM [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR219QSM [1.62, 33.3]
n
31,290,335
mean
9.79
sd
4.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312903350.97% 22750
chr1 3143370 1.26% 2288
chr2 2156952 0.89% 1488
chr3 1919368 0.97% 1371
chr4 1414008 0.74% 950
chr5 1531154 0.84% 1050
chr6 1880903 1.10% 1298
chr7 1571008 0.99% 1182
chr8 1158814 0.80% 841
chr9 1307072 0.94% 996
chr10 1368475 1.02% 956
chr11 1624074 1.20% 1132
chr12 1673233 1.26% 1152
chr13 666912 0.58% 477
chr14 1022200 0.95% 744
chr15 1038843 1.02% 766
chr16 1108105 1.23% 857
chr17 1686214 2.03% 1283
chr18 530439 0.66% 392
chr19 1733793 2.96% 1446
chr20 736479 1.14% 554
chr21 289142 0.62% 232
chr22 633687 1.25% 511
chrX 1059087 0.68% 765
chrY 37003 0.06% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22750 215 16297 1375.4 1173
global segment-length histogram

Files

Filename Size md5
ENCFF888ANN.bed.gz 628.3 KB 42eac9c0960523a2484897d0550961b9
ENCFF888ANN.tabix.bed.gz 266.52 KB 57d4b0744f7dfa07f564c12e7c5bcbd8
ENCFF888ANN.tabix.bed.gz.tbi 147.49 KB b41e700f0cc23b12adf0b964500b40e1
genomic_resource.yaml 1.76 KB 07fe5f55d4dde7ca663972fc704f7221
statistics/