Histone_ChIP-seq_ENCSR216YPQ
Histone_ChIP-seq ENCSR216YPQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR216YPQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR216YPQ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN799RCG|/analyses/ENCAN799RCG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF187SGX|/files/ENCFF187SGX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF187SGX|/files/ENCFF187SGX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR216YPQ | float |
Histone_ChIP-seq_ENCSR216YPQ |
Histone_ChIP-seq ENCSR216YPQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me3"]
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[1.68, 52.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF365SGK.bed.gz | 926.34 KB | c12aa4c6f6a3d041e4dde20d4cd02588 |
| ENCFF365SGK.bed.gz.dvc | 100.0 B | 2ada831837737663bf327ab0424f7ce8 |
| ENCFF365SGK.tabix.bed.gz | 393.21 KB | 9264f0eab05b53bb3c5da26091cc1b64 |
| ENCFF365SGK.tabix.bed.gz.dvc | 106.0 B | ffd1d9fad7301b87d3153afeaafea43e |
| ENCFF365SGK.tabix.bed.gz.tbi | 195.92 KB | 9ab2f0200d16e8d1331599375e155be1 |
| ENCFF365SGK.tabix.bed.gz.tbi.dvc | 110.0 B | f3db3bfaec320587ae6e0b15b8c1050d |
| genomic_resource.yaml | 2.79 KB | 592aa6113de547560b77bf07144e6d15 |
| genomic_resource_original.yaml | 2.65 KB | 4c699cad45860f25f93ff7a2998472bd |
| statistics/ |