Resource

Id Histone_ChIP-seq/ENCSR215QQEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR215QQE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR215QQE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:34.119119+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR215QQE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR215QQE float

Histone_ChIP-seq_ENCSR215QQE
Histone_ChIP-seq ENCSR215QQE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR215QQE [1.84, 53.2]
n
49,878,665
mean
21
sd
11.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 498786651.55% 30369
chr1 4843151 1.95% 2905
chr2 3487723 1.44% 2134
chr3 3023321 1.52% 1775
chr4 2094690 1.10% 1248
chr5 2537662 1.40% 1499
chr6 2986093 1.75% 1805
chr7 2414844 1.52% 1547
chr8 1976611 1.36% 1168
chr9 2051601 1.48% 1294
chr10 2151775 1.61% 1319
chr11 2657057 1.97% 1550
chr12 2623964 1.97% 1553
chr13 1177850 1.03% 738
chr14 1591435 1.49% 950
chr15 1559686 1.53% 965
chr16 1891811 2.09% 1183
chr17 2690504 3.23% 1624
chr18 946401 1.18% 605
chr19 2928776 5.00% 1829
chr20 1249949 1.94% 781
chr21 490655 1.05% 324
chr22 1069769 2.11% 664
chrX 1433337 0.92% 909
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30369 214 24926 1642.42 1300
global segment-length histogram

Files

Filename Size md5
ENCFF700VSF.bed.gz 745.48 KB e89936ca45081f513cd2f89b69707670
ENCFF700VSF.tabix.bed.gz 339.12 KB 70eb27e7c25b5bfd44b6c83b65feb98a
ENCFF700VSF.tabix.bed.gz.tbi 179.7 KB 3e7ceddfe8becc92210aef58c5a5a169
genomic_resource.yaml 1.74 KB 7ae58f8b9eabdb52be3565946e3db495
statistics/