Resource

Id Histone_ChIP-seq/ENCSR215EFAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR215EFA [biosample_summary="Homo sapiens chorion tissue male embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR215EFA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003124/
  • biosample_summary: Homo sapiens chorion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:44.269262+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR215EFA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR215EFA float

Histone_ChIP-seq_ENCSR215EFA
Histone_ChIP-seq ENCSR215EFA [biosample_summary="Homo sapiens chorion tissue male embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR215EFA [2.05, 59.4]
n
31,008,230
mean
21.1
sd
10.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 310082300.96% 21613
chr1 3110599 1.25% 2148
chr2 2076954 0.86% 1431
chr3 1722831 0.87% 1170
chr4 1227847 0.65% 816
chr5 1478463 0.81% 946
chr6 1805977 1.06% 1222
chr7 1519834 0.95% 1100
chr8 1122168 0.77% 762
chr9 1278716 0.92% 915
chr10 1288487 0.96% 885
chr11 1718290 1.27% 1165
chr12 1637256 1.23% 1137
chr13 606670 0.53% 431
chr14 1039754 0.97% 700
chr15 986310 0.97% 691
chr16 1260088 1.39% 875
chr17 1845335 2.22% 1280
chr18 480645 0.60% 367
chr19 2225439 3.80% 1610
chr20 775521 1.20% 566
chr21 300000 0.64% 216
chr22 650056 1.28% 492
chrX 808399 0.52% 658
chrY 42591 0.07% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21613 235 14094 1434.7 1233
global segment-length histogram

Files

Filename Size md5
ENCFF084NBD.bed.gz 504.81 KB c8d801f4e1cf4aab5982718431e199ea
ENCFF084NBD.tabix.bed.gz 237.43 KB 6a46446701d970439508d53f49dce652
ENCFF084NBD.tabix.bed.gz.tbi 135.34 KB a9234467d3b911c172708c165d24d544
genomic_resource.yaml 1.49 KB 25df2259dbb22afd4523ef42a420218e
statistics/