Histone_ChIP-seq_ENCSR214WRA
Histone_ChIP-seq ENCSR214WRA [biosample_summary="Homo sapiens iPS-20b" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR214WRA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR214WRA [biosamplesummary="Homo sapiens iPS-20b" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN701XIL|/analyses/ENCAN701XIL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF101UEL|/files/ENCFF101UEL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19045100 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF097SGA|/files/ENCFF097SGA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 36333931 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF333YFW|/files/ENCFF333YFW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF333YFW|/files/ENCFF333YFW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR214WRA | float |
Histone_ChIP-seq_ENCSR214WRA |
Histone_ChIP-seq ENCSR214WRA [biosample_summary="Homo sapiens iPS-20b" and target="H3K9me3"]
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[1.87, 44.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF827EDV.bed.gz | 1.78 MB | 625f6a219124c2aff167ef27819c76f3 |
| ENCFF827EDV.bed.gz.dvc | 101.0 B | aac769285e12d9a7d5495a7bef29d73e |
| ENCFF827EDV.tabix.bed.gz | 923.98 KB | be8b47e12c05673fe540013cad873b61 |
| ENCFF827EDV.tabix.bed.gz.dvc | 106.0 B | 6a43f8bad4f0c779cce82cad520cde5c |
| ENCFF827EDV.tabix.bed.gz.tbi | 309.2 KB | 2cc303a579273f1a4032e933f9866d84 |
| ENCFF827EDV.tabix.bed.gz.tbi.dvc | 110.0 B | 102cf5616aec084f36bbe6c7d36c5101 |
| genomic_resource.yaml | 3.66 KB | 35c6aa9338ef4e32e7052e1fc49989a7 |
| genomic_resource_original.yaml | 3.55 KB | 90b0e00f2910d0425bd9939c6ac7bfaa |
| statistics/ |