Histone_ChIP-seq_ENCSR214NMO
Histone_ChIP-seq ENCSR214NMO [biosample_summary="Homo sapiens SJSA1" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR214NMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR214NMO [biosamplesummary="Homo sapiens SJSA1" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN521QBP|/analyses/ENCAN521QBP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF660SFB|/files/ENCFF660SFB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF660SFB|/files/ENCFF660SFB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.73. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF656NBV|/files/ENCFF656NBV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF656NBV|/files/ENCFF656NBV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR214NMO | float |
Histone_ChIP-seq_ENCSR214NMO |
Histone_ChIP-seq ENCSR214NMO [biosample_summary="Homo sapiens SJSA1" and target="H3K4me3"]
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[1.32, 293] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF870NJQ.bed.gz | 604.09 KB | 37e6d783769752667e374c943c9f207d |
| ENCFF870NJQ.bed.gz.dvc | 100.0 B | 928bf02be192f44892b6d0f3535811e7 |
| ENCFF870NJQ.tabix.bed.gz | 245.95 KB | 77283cb9dd6cb15b24ec1f9cf5a29be3 |
| ENCFF870NJQ.tabix.bed.gz.dvc | 106.0 B | e6a4370c922022ea12ba9850dc663454 |
| ENCFF870NJQ.tabix.bed.gz.tbi | 143.28 KB | b0c109889dfc076464afe6df48b087b7 |
| ENCFF870NJQ.tabix.bed.gz.tbi.dvc | 110.0 B | d6f6fd32aa872727d15f87c0d2c2a2b8 |
| genomic_resource.yaml | 4.0 KB | 630672b79f2a98d6f6c54c9cacab3af2 |
| genomic_resource_original.yaml | 3.89 KB | 47ed041cad765e6be3f82f0456a7c64e |
| statistics/ |