Resource
| Id | Histone_ChIP-seq/ENCSR214JUK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR214JUK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN534XAO|/analyses/ENCAN534XAO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF524DCO|/files/ENCFF524DCO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27783232 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR214JUK | float |
Histone_ChIP-seq_ENCSR214JUK |
Histone_ChIP-seq ENCSR214JUK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K27me3"]
|
 |
[1.77, 11.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18797324 | 0.58% | 34436 |
| chr1 | 2023632 | 0.81% | 3646 |
| chr1_KI270713v1_random | 2262 | 5.55% | 3 |
| chr2 | 1111613 | 0.46% | 1982 |
| chr3 | 568459 | 0.29% | 1070 |
| chr4 | 628989 | 0.33% | 1071 |
| chr5 | 849539 | 0.47% | 1515 |
| chr6 | 814607 | 0.48% | 1455 |
| chr7 | 827541 | 0.52% | 1464 |
| chr8 | 754126 | 0.52% | 1406 |
| chr9 | 830309 | 0.60% | 1407 |
| chr10 | 919037 | 0.69% | 1603 |
| chr11 | 989080 | 0.73% | 1850 |
| chr12 | 856778 | 0.64% | 1595 |
| chr13 | 407483 | 0.36% | 748 |
| chr14 | 534891 | 0.50% | 1013 |
| chr15 | 506051 | 0.50% | 940 |
| chr16 | 800852 | 0.89% | 1462 |
| chr17 | 1222912 | 1.47% | 2123 |
| chr17_GL000205v2_random | 21961 | 11.83% | 32 |
| chr18 | 248226 | 0.31% | 483 |
| chr19 | 985036 | 1.68% | 1748 |
| chr20 | 949104 | 1.47% | 1708 |
| chr21 | 200355 | 0.43% | 385 |
| chr22 | 668774 | 1.32% | 1236 |
| chr22_KI270733v1_random | 393 | 0.22% | 1 |
| chrUn_GL000219v1 | 2640 | 1.47% | 5 |
| chrUn_KI270744v1 | 582 | 0.35% | 1 |
| chrX | 1072092 | 0.69% | 2484 |
| 3338 contigs with no values (185550722 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34436 | 175 | 5197 | 545.86 | 445 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF362NPI.bed.gz | 693.24 KB | 7a0dab0030245dd8e5505f79bde6d34e |
| ENCFF362NPI.tabix.bed.gz | 346.8 KB | 218fd1f8f4e82ddc3aa8a942a28edccb |
| ENCFF362NPI.tabix.bed.gz.tbi | 133.23 KB | 23a2df92c0a2ad380fb94ca0ebaa25fb |
| genomic_resource.yaml | 2.17 KB | 577e6ff223f7936904eb89b1484bf886 |
| statistics/ |