Resource

Id Histone_ChIP-seq/ENCSR213JMOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR213JMO [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K79me1"]
Description
Labels
  • accession: ENCSR213JMO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000351/
  • biosample_summary: Homo sapiens trophoblast cell originated from H1
  • date_created: 2015-09-16T19:17:01.443710+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR213JMO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K79me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR213JMO float

Histone_ChIP-seq_ENCSR213JMO
Histone_ChIP-seq ENCSR213JMO [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K79me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR213JMO [1.69, 33]
n
37,892,641
mean
6.16
sd
2.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 378926411.18% 101054
chr1 4046185 1.63% 10476
chr2 2935781 1.21% 8023
chr3 2185756 1.10% 6119
chr4 1443150 0.76% 4247
chr5 2099891 1.16% 5705
chr6 1967144 1.15% 5630
chr7 1712523 1.07% 4768
chr8 1745822 1.20% 4848
chr9 1739685 1.26% 4593
chr10 2088755 1.56% 5461
chr11 2084628 1.54% 5424
chr12 1908390 1.43% 5062
chr13 935390 0.82% 2686
chr14 1315007 1.23% 3368
chr15 1280921 1.26% 3298
chr16 1256497 1.39% 3186
chr17 1872626 2.25% 4556
chr18 736609 0.92% 2093
chr19 1507723 2.57% 3617
chr20 1094912 1.70% 2704
chr21 384935 0.82% 1010
chr22 847390 1.67% 2083
chrX 661576 0.42% 1971
chrY 41345 0.07% 126
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101054 130 6476 374.97 295
global segment-length histogram

Files

Filename Size md5
ENCFF681PLG.bed.gz 2.17 MB db4fd7779672a643e52e486a901694e0
ENCFF681PLG.tabix.bed.gz 1020.61 KB 18d4cda46e86aee3b4586a77659d9036
ENCFF681PLG.tabix.bed.gz.tbi 263.8 KB b436fb9adfc0f44f5d60c4c831cf404f
genomic_resource.yaml 1.7 KB 255381d90e08a45ad2e51de7aa9c9453
statistics/