Resource
| Id | Histone_ChIP-seq/ENCSR213APK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR213APK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN082BVN|/analyses/ENCAN082BVN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted unfiltered alignments file {ENCFF474ZYQ|/files/ENCFF474ZYQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 40249924 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR213APK | float |
Histone_ChIP-seq_ENCSR213APK |
Histone_ChIP-seq ENCSR213APK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K9me3"]
|
 |
[1.41, 20.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34833547 | 1.08% | 67050 |
| chr1 | 2105479 | 0.85% | 4222 |
| chr1_KI270709v1_random | 2032 | 3.04% | 5 |
| chr2 | 2348093 | 0.97% | 4766 |
| chr2_KI270716v1_random | 1966 | 1.28% | 5 |
| chr3 | 1769613 | 0.89% | 3789 |
| chr4 | 1847822 | 0.97% | 3866 |
| chr4_GL000008v2_random | 4389 | 2.09% | 1 |
| chr5 | 2258219 | 1.24% | 4373 |
| chr5_GL000208v1_random | 371 | 0.40% | 1 |
| chr6 | 1498217 | 0.88% | 3268 |
| chr7 | 2178070 | 1.37% | 4292 |
| chr8 | 1696085 | 1.17% | 3400 |
| chr9 | 1223905 | 0.88% | 2362 |
| chr9_KI270720v1_random | 378 | 0.97% | 1 |
| chr10 | 1752789 | 1.31% | 3306 |
| chr11 | 1473101 | 1.09% | 2943 |
| chr12 | 1738659 | 1.30% | 3219 |
| chr13 | 843785 | 0.74% | 1797 |
| chr14 | 883929 | 0.83% | 1813 |
| chr14_GL000225v1_random | 6361 | 3.01% | 16 |
| chr14_KI270722v1_random | 1606 | 0.83% | 4 |
| chr14_KI270723v1_random | 192 | 0.50% | 1 |
| chr15 | 901419 | 0.88% | 1689 |
| chr16 | 1173955 | 1.30% | 2227 |
| chr17 | 743185 | 0.89% | 1373 |
| chr17_GL000205v2_random | 533 | 0.29% | 1 |
| chr17_KI270729v1_random | 50734 | 18.07% | 52 |
| chr17_KI270730v1_random | 16874 | 14.99% | 18 |
| chr18 | 704949 | 0.88% | 1453 |
| chr19 | 3472433 | 5.92% | 4696 |
| chr20 | 783437 | 1.22% | 1417 |
| chr21 | 468410 | 1.00% | 810 |
| chr22 | 397740 | 0.78% | 742 |
| chr22_KI270732v1_random | 702 | 1.69% | 2 |
| chr22_KI270735v1_random | 2506 | 5.85% | 4 |
| chr22_KI270736v1_random | 123234 | 67.74% | 38 |
| chr22_KI270738v1_random | 7388 | 7.43% | 18 |
| chrUn_GL000216v2 | 8949 | 5.07% | 18 |
| chrUn_GL000219v1 | 889 | 0.50% | 2 |
| chrUn_GL000224v1 | 5610 | 3.12% | 6 |
| chrUn_KI270435v1 | 1025 | 1.10% | 2 |
| chrUn_KI270438v1 | 24930 | 22.16% | 32 |
| chrUn_KI270442v1 | 74498 | 19.00% | 57 |
| chrUn_KI270466v1 | 427 | 34.63% | 1 |
| chrUn_KI270467v1 | 904 | 23.06% | 1 |
| chrUn_KI270508v1 | 311 | 15.94% | 1 |
| chrUn_KI270511v1 | 229 | 2.82% | 1 |
| chrUn_KI270512v1 | 1060 | 4.67% | 2 |
| chrUn_KI270519v1 | 2368 | 1.71% | 3 |
| chrUn_KI270538v1 | 1135 | 1.24% | 3 |
| chrUn_KI270589v1 | 3018 | 6.79% | 1 |
| chrUn_KI270590v1 | 1506 | 32.15% | 3 |
| chrUn_KI270591v1 | 817 | 14.10% | 2 |
| chrUn_KI270742v1 | 292 | 0.16% | 1 |
| chrUn_KI270744v1 | 247 | 0.15% | 1 |
| chrUn_KI270746v1 | 372 | 0.56% | 1 |
| chrUn_KI270750v1 | 276 | 0.19% | 1 |
| chrUn_KI270751v1 | 1519 | 1.01% | 2 |
| chrUn_KI270756v1 | 5150 | 6.47% | 6 |
| chrUn_KI270757v1 | 3561 | 5.00% | 5 |
| chrX | 2195823 | 1.41% | 4893 |
| chrY | 16071 | 0.03% | 15 |
| 3304 contigs with no values (124799522 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67050 | 170 | 39431 | 519.52 | 404 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF120UPG.bed.gz | 1.24 MB | cf666edada6e1874a4e3ce37ff5840ed |
| ENCFF120UPG.tabix.bed.gz | 645.65 KB | 53728c6a65e11a0364d23ee8b9920f16 |
| ENCFF120UPG.tabix.bed.gz.tbi | 288.61 KB | ba0c34c2384eafb466d9c778962c5920 |
| genomic_resource.yaml | 2.16 KB | b0a51f7ffef0189743810af31d9c12a6 |
| statistics/ |