Resource
| Id | Histone_ChIP-seq/ENCSR212LIS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR212LIS [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN901TNE|/analyses/ENCAN901TNE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF501UFH|/files/ENCFF501UFH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 44415652 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR212LIS | float |
Histone_ChIP-seq_ENCSR212LIS |
Histone_ChIP-seq ENCSR212LIS [biosample_summary="Homo sapiens luminal epithelial cell of mammary gland female adult (33 years)" and target="H3K36me3"]
|
 |
[1.85, 15.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 119838132 | 3.72% | 215975 |
| chr1 | 12120767 | 4.87% | 21799 |
| chr2 | 8538002 | 3.53% | 17335 |
| chr3 | 7028466 | 3.54% | 13672 |
| chr4 | 4462118 | 2.35% | 9347 |
| chr5 | 5241919 | 2.89% | 10385 |
| chr6 | 5011608 | 2.93% | 10218 |
| chr7 | 5727739 | 3.59% | 10701 |
| chr8 | 4219067 | 2.91% | 8410 |
| chr9 | 5283505 | 3.82% | 9267 |
| chr10 | 5262272 | 3.93% | 10141 |
| chr11 | 6459213 | 4.78% | 10990 |
| chr12 | 6295060 | 4.72% | 10949 |
| chr13 | 2072301 | 1.81% | 4516 |
| chr14 | 4006257 | 3.74% | 7665 |
| chr15 | 4199008 | 4.12% | 8082 |
| chr16 | 5754405 | 6.37% | 8740 |
| chr17 | 7126512 | 8.56% | 11261 |
| chr18 | 2201689 | 2.74% | 4531 |
| chr19 | 8652562 | 14.76% | 10849 |
| chr20 | 3754916 | 5.83% | 6354 |
| chr21 | 1672645 | 3.58% | 2799 |
| chr22 | 3619875 | 7.12% | 5304 |
| chrX | 1127411 | 0.72% | 2658 |
| chrY | 815 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 215975 | 150 | 16324 | 554.87 | 364 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF220HJF.bed.gz | 3.75 MB | ce0df036b70a05d79586238939c034eb |
| ENCFF220HJF.tabix.bed.gz | 1.97 MB | 590afbbf64c712f52b03e7a741b8ce3d |
| ENCFF220HJF.tabix.bed.gz.tbi | 225.43 KB | 9c926b6b9ab614d0d7d21fcad153bdd6 |
| genomic_resource.yaml | 2.07 KB | 5706165232855db79560085a17c05759 |
| statistics/ |