Histone_ChIP-seq_ENCSR210ZPC
Histone_ChIP-seq ENCSR210ZPC [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR210ZPC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR210ZPC [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN331MWF|/analyses/ENCAN331MWF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF699GFE|/files/ENCFF699GFE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11682473 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF821PAH|/files/ENCFF821PAH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF821PAH|/files/ENCFF821PAH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR210ZPC | float |
Histone_ChIP-seq_ENCSR210ZPC |
Histone_ChIP-seq ENCSR210ZPC [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K27ac"]
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[1.3, 51.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF002NFJ.bed.gz | 2.68 MB | 030e98301139042799675fefd1cfdacc |
| ENCFF002NFJ.bed.gz.dvc | 101.0 B | cee581ddacbf83c73588aec9bc2d80c6 |
| ENCFF002NFJ.tabix.bed.gz | 1.13 MB | 6dcf90ac0e264271a5cf3008d412fd13 |
| ENCFF002NFJ.tabix.bed.gz.dvc | 107.0 B | 57e28a18b63777665ee353fb4055f0af |
| ENCFF002NFJ.tabix.bed.gz.tbi | 332.14 KB | 94dad343fc6703561068246a822a232e |
| ENCFF002NFJ.tabix.bed.gz.tbi.dvc | 110.0 B | b64cf00425cab22518b52f718a576506 |
| genomic_resource.yaml | 3.24 KB | ad8fde658cc1df009a5deb73b9d5e8d0 |
| genomic_resource_original.yaml | 3.1 KB | 56098c2bfe0f5d41fbefbbf83c887a06 |
| statistics/ |