Resource

Id Histone_ChIP-seq/ENCSR209QGZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR209QGZ [biosample_summary="Homo sapiens spinal cord tissue female embryo (108 days)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR209QGZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002240/
  • biosample_summary: Homo sapiens spinal cord tissue female embryo (108 days)
  • date_created: 2015-09-16T21:42:55.411209+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR209QGZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR209QGZ float

Histone_ChIP-seq_ENCSR209QGZ
Histone_ChIP-seq ENCSR209QGZ [biosample_summary="Homo sapiens spinal cord tissue female embryo (108 days)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR209QGZ [1.87, 108]
n
57,827,775
mean
15
sd
13.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 578277751.80% 63922
chr1 5640648 2.27% 6005
chr1_KI270713v1_random 314 0.77% 1
chr1_KI270714v1_random 214 0.51% 1
chr2 4318223 1.78% 4959
chr3 3820093 1.93% 4117
chr4 2270624 1.19% 2612
chr5 3098610 1.71% 3370
chr6 3612463 2.11% 3908
chr7 2673500 1.68% 3045
chr8 2077098 1.43% 2544
chr9 2652089 1.92% 2977
chr10 3021815 2.26% 3266
chr11 3316142 2.45% 3636
chr12 2871371 2.15% 2969
chr13 1454612 1.27% 1643
chr14 1990183 1.86% 2094
chr15 2038148 2.00% 2190
chr16 1833302 2.03% 2137
chr17 3427177 4.12% 3438
chr18 1154503 1.44% 1364
chr19 2150414 3.67% 2317
chr20 1380692 2.14% 1700
chr21 639498 1.37% 742
chr22 1288281 2.54% 1457
chrUn_GL000219v1 795 0.44% 2
chrX 1096966 0.70% 1428
3340 contigs with no values (186042840 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63922 170 43823 904.66 629
global segment-length histogram

Files

Filename Size md5
ENCFF835MQW.bed.gz 1.35 MB 3028023bab4e061e1688e1c0e94d03eb
ENCFF835MQW.tabix.bed.gz 660.86 KB 7d4d350e619b9cf5f188c3506e93ec1c
ENCFF835MQW.tabix.bed.gz.tbi 238.68 KB f00bc2dba84f31299899e9b581ac9321
genomic_resource.yaml 1.99 KB 61d7767570aaaab7dc3e55bfb69698bb
statistics/