Histone_ChIP-seq_ENCSR207VLY
Histone_ChIP-seq ENCSR207VLY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR207VLY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR207VLY [biosamplesummary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male child (6 years) with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN476GZX|/analyses/ENCAN476GZX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF973BRL|/files/ENCFF973BRL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF973BRL|/files/ENCFF973BRL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF398AMQ|/files/ENCFF398AMQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF398AMQ|/files/ENCFF398AMQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR207VLY | float |
Histone_ChIP-seq_ENCSR207VLY |
Histone_ChIP-seq ENCSR207VLY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me1"]
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[1.32, 10] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF456GWH.bed.gz | 3.41 MB | 99d8268d33b64c64ec22e8ebb8baff14 |
| ENCFF456GWH.bed.gz.dvc | 101.0 B | ef8388bcc8791a19de58e0a78bac155f |
| ENCFF456GWH.tabix.bed.gz | 1.47 MB | 34d055c71dcad5d39f8ce09e24d8bf7b |
| ENCFF456GWH.tabix.bed.gz.dvc | 107.0 B | dbee285d02775f7075fd0d0705a7e035 |
| ENCFF456GWH.tabix.bed.gz.tbi | 401.57 KB | 2e15dbd50c8c5ed4f325e613d12a12aa |
| ENCFF456GWH.tabix.bed.gz.tbi.dvc | 110.0 B | 508489fa96791f9481cd33d2cb4c4074 |
| genomic_resource.yaml | 4.19 KB | b82067e18240e52df2abd4507a89df11 |
| genomic_resource_original.yaml | 4.03 KB | 7034b383e85169f1a9a25dbab86475b5 |
| statistics/ |