Resource

Id Histone_ChIP-seq/ENCSR206STNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR206STN [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR206STN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (37 years)
  • date_created: 2016-03-19T00:36:19.617221+00:00
  • date_released: 2016-11-17
  • doi: 10.17989/ENCSR206STN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment: As of January 24, 2017, the lab has submitted new control fastqs, prompting new peak and signal calls for its downstream experiments.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR206STN float

Histone_ChIP-seq_ENCSR206STN
Histone_ChIP-seq ENCSR206STN [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR206STN [1.49, 30]
n
43,695,672
mean
12.3
sd
6.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 436956721.36% 31367
chr1 4348549 1.75% 3026
chr2 3097276 1.28% 2255
chr3 2577011 1.30% 1807
chr4 1777434 0.93% 1283
chr5 2071999 1.14% 1427
chr6 2600184 1.52% 1859
chr7 2126950 1.33% 1561
chr8 1656037 1.14% 1212
chr9 1813903 1.31% 1361
chr10 2001549 1.50% 1520
chr11 2342053 1.73% 1618
chr12 2324331 1.74% 1569
chr13 934771 0.82% 675
chr14 1392161 1.30% 967
chr15 1423833 1.40% 1039
chr16 1665740 1.84% 1229
chr17 2502261 3.01% 1776
chr18 779815 0.97% 619
chr19 2593668 4.42% 1854
chr20 1107066 1.72% 815
chr21 453644 0.97% 335
chr22 949866 1.87% 714
chrX 1119882 0.72% 827
chrY 35689 0.06% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31367 245 12972 1393.05 1065
global segment-length histogram

Files

Filename Size md5
ENCFF774KTF.bed.gz 807.67 KB cfbb3e4e8cc2fdf38ec50631a2cf3b13
ENCFF774KTF.tabix.bed.gz 357.95 KB c1e4d662e8bbc4ca0a9cbcc6bed00a08
ENCFF774KTF.tabix.bed.gz.tbi 178.68 KB ed2029b5e69b2549e15cd0f2dd28fbc4
genomic_resource.yaml 1.66 KB c39f3c54d8a9de44ee9cb21c0842796f
statistics/