Resource
| Id | Histone_ChIP-seq/ENCSR205NEW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR205NEW [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN393IMF|/analyses/ENCAN393IMF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN393IMF|/analyses/ENCAN393IMF/} has in progress subobject document {4d327d98-6f64-47ca-9e07-819eec4bc535|/documents/4d327d98-6f64-47ca-9e07-819eec4bc535/} audit_warning: Processed alignments file {ENCFF111BMM|/files/ENCFF111BMM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 35256348 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR205NEW | float |
Histone_ChIP-seq_ENCSR205NEW |
Histone_ChIP-seq ENCSR205NEW [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K36me3"]
|
 |
[1.77, 31.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 140382274 | 4.36% | 239354 |
| chr1 | 13439987 | 5.40% | 23373 |
| chr2 | 9097108 | 3.76% | 18140 |
| chr3 | 7913979 | 3.99% | 15012 |
| chr4 | 4617774 | 2.43% | 9521 |
| chr5 | 5605206 | 3.09% | 10890 |
| chr6 | 5766377 | 3.38% | 11286 |
| chr7 | 7317047 | 4.59% | 12395 |
| chr8 | 4580938 | 3.16% | 8701 |
| chr9 | 6948620 | 5.02% | 11172 |
| chr10 | 6409050 | 4.79% | 12079 |
| chr11 | 7841596 | 5.80% | 11988 |
| chr12 | 7079093 | 5.31% | 12206 |
| chr13 | 2360717 | 2.06% | 4983 |
| chr14 | 4597858 | 4.30% | 8474 |
| chr15 | 4569597 | 4.48% | 8763 |
| chr16 | 7655243 | 8.47% | 10612 |
| chr17 | 9963942 | 11.97% | 13961 |
| chr18 | 2038431 | 2.54% | 4314 |
| chr19 | 9685247 | 16.52% | 11092 |
| chr20 | 4409374 | 6.84% | 7132 |
| chr21 | 1630644 | 3.49% | 2582 |
| chr22 | 4866140 | 9.58% | 6304 |
| chrX | 1924729 | 1.23% | 4196 |
| chrY | 63577 | 0.11% | 178 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 239354 | 175 | 24156 | 586.5 | 383 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF299WMO.bed.gz | 5.07 MB | 75775ffbac3fb2378d0789d04686bbd0 |
| ENCFF299WMO.tabix.bed.gz | 2.33 MB | 7366d33c75f14d87bdb156dc013fa4b1 |
| ENCFF299WMO.tabix.bed.gz.tbi | 242.17 KB | 8ea44e2f96336fac074fe8e718f2bc44 |
| genomic_resource.yaml | 2.21 KB | 9a6d1f57b78836a48a7709dc03883bd5 |
| statistics/ |