Histone_ChIP-seq_ENCSR203RKZ
Histone_ChIP-seq ENCSR203RKZ [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR203RKZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR203RKZ [biosamplesummary="Homo sapiens liver tissue male adult (78 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN917IQU|/analyses/ENCAN917IQU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF952GVO|/files/ENCFF952GVO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17021472 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF952GVO|/files/ENCFF952GVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF952GVO|/files/ENCFF952GVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.26. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR203RKZ | float |
Histone_ChIP-seq_ENCSR203RKZ |
Histone_ChIP-seq ENCSR203RKZ [biosample_summary="Homo sapiens liver tissue male adult (78 years)" and target="H3K4me1"]
|
|
[1.38, 30.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF713BKS.bed.gz | 2.37 MB | d3db32dcd34d69878a2a5aeb87751fab |
| ENCFF713BKS.bed.gz.dvc | 101.0 B | 40ce1cfba10c3f12d531e52554dd01a1 |
| ENCFF713BKS.tabix.bed.gz | 1.12 MB | ad58e027ce38918faebdede4adf045f7 |
| ENCFF713BKS.tabix.bed.gz.dvc | 107.0 B | ba05c735103343a65a84fee529d3bfc3 |
| ENCFF713BKS.tabix.bed.gz.tbi | 298.77 KB | 8cef20cf6e0800f428714e6c62ac2c12 |
| ENCFF713BKS.tabix.bed.gz.tbi.dvc | 110.0 B | 469545dd169cccc294817271ead4a367 |
| genomic_resource.yaml | 3.24 KB | b8b866cd209c32a6182d29748cbb288c |
| genomic_resource_original.yaml | 3.11 KB | 1e427f50b40c2e7a1a68b89b15b1e4b8 |
| statistics/ |