Resource
| Id | Histone_ChIP-seq/ENCSR203BOA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR203BOA [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN502GCI|/analyses/ENCAN502GCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF222CCX|/files/ENCFF222CCX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11029052 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR203BOA | float |
Histone_ChIP-seq_ENCSR203BOA |
Histone_ChIP-seq ENCSR203BOA [biosample_summary="Homo sapiens chorionic villus tissue male embryo (16 weeks)" and target="H3K36me3"]
|
 |
[1.93, 58.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34518468 | 1.07% | 73553 |
| chr1 | 3279509 | 1.32% | 7236 |
| chr2 | 1946457 | 0.80% | 4761 |
| chr3 | 1639214 | 0.83% | 3813 |
| chr4 | 960889 | 0.51% | 2225 |
| chr5 | 1322313 | 0.73% | 3211 |
| chr6 | 1119228 | 0.66% | 2647 |
| chr7 | 1656722 | 1.04% | 3533 |
| chr8 | 893974 | 0.62% | 2087 |
| chr9 | 1603031 | 1.16% | 3390 |
| chr10 | 1270596 | 0.95% | 3046 |
| chr11 | 1986135 | 1.47% | 4022 |
| chr12 | 1959726 | 1.47% | 4134 |
| chr13 | 401334 | 0.35% | 1098 |
| chr14 | 1081728 | 1.01% | 2554 |
| chr15 | 1033323 | 1.01% | 2463 |
| chr16 | 2287795 | 2.53% | 4271 |
| chr17 | 2687166 | 3.23% | 5212 |
| chr18 | 377895 | 0.47% | 980 |
| chr19 | 3510889 | 5.99% | 5884 |
| chr20 | 1250311 | 1.94% | 2536 |
| chr21 | 491854 | 1.05% | 980 |
| chr22 | 1406332 | 2.77% | 2560 |
| chrM | 1182 | 7.13% | 3 |
| chrX | 345245 | 0.22% | 884 |
| chrY | 5620 | 0.01% | 23 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73553 | 135 | 13752 | 469.3 | 349 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF405BFR.bed.gz | 1.38 MB | 55a21f33d59437a7dad76e20dd9c7900 |
| ENCFF405BFR.tabix.bed.gz | 710.76 KB | b6d110e0bf823cca2a2d6a07ebb37187 |
| ENCFF405BFR.tabix.bed.gz.tbi | 166.02 KB | 3d4aa84a0e6a3fa2e77771e842cb17d1 |
| genomic_resource.yaml | 2.01 KB | fc5953829ad68b0b9f563806253f75d9 |
| statistics/ |