Histone_ChIP-seq_ENCSR202XTW
Histone_ChIP-seq ENCSR202XTW [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR202XTW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR202XTW [biosamplesummary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN255XCJ|/analyses/ENCAN255XCJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF061NMR|/files/ENCFF061NMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF061NMR|/files/ENCFF061NMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR202XTW | float |
Histone_ChIP-seq_ENCSR202XTW |
Histone_ChIP-seq ENCSR202XTW [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me1"]
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[1.6, 6.08] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF863RIB.bed.gz | 802.7 KB | 5017ed2ee74f3377e8020f1426c22424 |
| ENCFF863RIB.bed.gz.dvc | 100.0 B | 88c5d6d132bee3a455c6fc1a7abbbe88 |
| ENCFF863RIB.tabix.bed.gz | 395.16 KB | f2fe77063ee123510db41be3c80550fe |
| ENCFF863RIB.tabix.bed.gz.dvc | 106.0 B | fd06f933f0683c138768d34f211241b0 |
| ENCFF863RIB.tabix.bed.gz.tbi | 160.94 KB | f9e81b322ef784a4dfac4307b9ac06fc |
| ENCFF863RIB.tabix.bed.gz.tbi.dvc | 110.0 B | 8cd5c70c54c8e3d2ace3cb947ca8f463 |
| genomic_resource.yaml | 2.77 KB | f6bdc03acf27c1ab4734607f1e73d92b |
| genomic_resource_original.yaml | 2.63 KB | 29a2aae64ff427df43c8fdb380e00a24 |
| statistics/ |