| Id: | Histone_ChIP-seq/ENCSR199VMI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR199VMI [biosamplesummary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (25 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN476ATK|/analyses/ENCAN476ATK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF699TVR|/files/ENCFF699TVR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 29185001 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF699TVR|/files/ENCFF699TVR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF699TVR|/files/ENCFF699TVR/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.33. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR199VMI | float |
Histone_ChIP-seq_ENCSR199VMI |
Histone_ChIP-seq ENCSR199VMI [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K4me1"]
|
 |
[1.62, 34.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF397JTT.bed.gz | 3.5 MB | b06bc5fb15f8a8477e353cf62d68949f |
| ENCFF397JTT.bed.gz.dvc | 101.0 B | 35b143de3aed9139a331a7bf5d22a96b |
| ENCFF397JTT.tabix.bed.gz | 1.63 MB | 70de00f8f6681575220d94a144bebe71 |
| ENCFF397JTT.tabix.bed.gz.dvc | 107.0 B | 07c40f01934a3561fb52d77de57b1d6c |
| ENCFF397JTT.tabix.bed.gz.tbi | 390.56 KB | 54c15327e98f65ab7ff91a060c13f025 |
| ENCFF397JTT.tabix.bed.gz.tbi.dvc | 110.0 B | b2f36cf13ae6b655a8813b55b090073a |
| genomic_resource.yaml | 3.46 KB | e6494e971086ed82d623c897abffee1f |
| genomic_resource_original.yaml | 3.28 KB | 29dd2c27ed3e8de14f44a1b12b547009 |
| statistics/ |