Histone_ChIP-seq_ENCSR199KHR
Histone_ChIP-seq ENCSR199KHR [biosample_summary="Homo sapiens OCI-LY7" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR199KHR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR199KHR [biosamplesummary="Homo sapiens OCI-LY7" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN590NSV|/analyses/ENCAN590NSV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF427SFL|/files/ENCFF427SFL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18379693 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF427SFL|/files/ENCFF427SFL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF427SFL|/files/ENCFF427SFL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR199KHR | float |
Histone_ChIP-seq_ENCSR199KHR |
Histone_ChIP-seq ENCSR199KHR [biosample_summary="Homo sapiens OCI-LY7" and target="H3K9me2"]
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[1.48, 4.41] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF601CVT.bed.gz | 70.2 KB | 0b742051c3caee4bd7cc86c5901f9b6f |
| ENCFF601CVT.bed.gz.dvc | 99.0 B | b78b99f99aecb4e8af6271b8d109c748 |
| ENCFF601CVT.tabix.bed.gz | 36.61 KB | 0a39e095bc6997cd0faf9defec55bbc5 |
| ENCFF601CVT.tabix.bed.gz.dvc | 105.0 B | 9476c6a6edb8989e457ae51c6e5ecdb0 |
| ENCFF601CVT.tabix.bed.gz.tbi | 38.48 KB | 59f262457fef3fbe25efd54c83571553 |
| ENCFF601CVT.tabix.bed.gz.tbi.dvc | 109.0 B | 3f8f645a065c464162d178b8ef9c8ef9 |
| genomic_resource.yaml | 3.17 KB | 9d37c72ba59e66a7dfe608a1e393078e |
| genomic_resource_original.yaml | 3.07 KB | 0126dc1a1efb7301ccc5067a94180fc1 |
| statistics/ |