Histone_ChIP-seq_ENCSR197QXT
Histone_ChIP-seq ENCSR197QXT [biosample_summary="Homo sapiens PC-3" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR197QXT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR197QXT [biosamplesummary="Homo sapiens PC-3" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN616VIM|/analyses/ENCAN616VIM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN616VIM|/analyses/ENCAN616VIM/} has in progress subobject document {52763a74-a091-4d64-8ce2-267aa48ad0af|/documents/52763a74-a091-4d64-8ce2-267aa48ad0af/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF190UZW|/files/ENCFF190UZW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF190UZW|/files/ENCFF190UZW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.42. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR197QXT | float |
Histone_ChIP-seq_ENCSR197QXT |
Histone_ChIP-seq ENCSR197QXT [biosample_summary="Homo sapiens PC-3" and target="H3K9ac"]
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[1.53, 73.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF698RYW.bed.gz | 1.44 MB | c40780cf8bd13480e7d7163b576180ec |
| ENCFF698RYW.bed.gz.dvc | 101.0 B | 41cefe7a2864024166cdae91d96b7f76 |
| ENCFF698RYW.tabix.bed.gz | 606.42 KB | 2d02b507b44df947360dee269a487848 |
| ENCFF698RYW.tabix.bed.gz.dvc | 106.0 B | b0975bd51b451f4cae2860b8758833c7 |
| ENCFF698RYW.tabix.bed.gz.tbi | 214.97 KB | ff58bb716e29736fd4b4af6fdc85e4b3 |
| ENCFF698RYW.tabix.bed.gz.tbi.dvc | 110.0 B | 2c630e3a0225fdaf0f1d4104e6cc660a |
| genomic_resource.yaml | 2.9 KB | 5200fc63f87e05914b7c149e31d330e0 |
| genomic_resource_original.yaml | 2.79 KB | b3f01e2bcccfa34004d5ab10e287eb5f |
| statistics/ |